Gene : Pavir.6NG112900 P. virgatum v4.1
Defline:  (1 of 3) 5.5.1.19 - Lycopene beta-cyclase Genomic Order:  1875
Name:  ? Pavir.6NG112900 Secondary Identifier:  ? PAC:37647085
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3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvirgatum CAROTENOID-PWY Panicum virgatum pathologic  
Pvirgatum PWY-5943 Panicum virgatum pathologic  
Pvirgatum PWY-5947 Panicum virgatum pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pavir.6NG112900 0.5kb upstream 0.5kb upstream 9941 true Chr06N: 53351627-53361567 Panicum virgatum
Pavir.6NG112900 0.5kb upstream 0.5kb upstream 500 false Chr06N: 53351627-53352126 Panicum virgatum
Pavir.6NG112900 0.5kb downstream 0.5kb downstream 9941 true Chr06N: 53352127-53362067 Panicum virgatum
Pavir.6NG112900 0.5kb downstream 0.5kb downstream 500 false Chr06N: 53361568-53362067 Panicum virgatum
Pavir.6NG112900 1.0kb upstream 1.0kb upstream 10441 true Chr06N: 53351127-53361567 Panicum virgatum
Pavir.6NG112900 1.0kb upstream 1.0kb upstream 1000 false Chr06N: 53351127-53352126 Panicum virgatum
Pavir.6NG112900 1.0kb downstream 1.0kb downstream 10441 true Chr06N: 53352127-53362567 Panicum virgatum
Pavir.6NG112900 1.0kb downstream 1.0kb downstream 1000 false Chr06N: 53361568-53362567 Panicum virgatum
Pavir.6NG112900 2.0kb upstream 2.0kb upstream 11441 true Chr06N: 53350127-53361567 Panicum virgatum
Pavir.6NG112900 2.0kb upstream 2.0kb upstream 2000 false Chr06N: 53350127-53352126 Panicum virgatum
Pavir.6NG112900 2.0kb downstream 2.0kb downstream 11441 true Chr06N: 53352127-53363567 Panicum virgatum
Pavir.6NG112900 2.0kb downstream 2.0kb downstream 2000 false Chr06N: 53361568-53363567 Panicum virgatum
Pavir.6NG112900 5.0kb upstream 5.0kb upstream 14441 true Chr06N: 53347127-53361567 Panicum virgatum
Pavir.6NG112900 5.0kb upstream 5.0kb upstream 5000 false Chr06N: 53347127-53352126 Panicum virgatum
Pavir.6NG112900 5.0kb downstream 5.0kb downstream 14441 true Chr06N: 53352127-53366567 Panicum virgatum
Pavir.6NG112900 5.0kb downstream 5.0kb downstream 5000 false Chr06N: 53361568-53366567 Panicum virgatum
Pavir.6NG112900 10.0kb upstream 10.0kb upstream 19441 true Chr06N: 53342127-53361567 Panicum virgatum
Pavir.6NG112900 10.0kb upstream 10.0kb upstream 10000 false Chr06N: 53342127-53352126 Panicum virgatum
Pavir.6NG112900 10.0kb downstream 10.0kb downstream 19441 true Chr06N: 53352127-53371567 Panicum virgatum
Pavir.6NG112900 10.0kb downstream 10.0kb downstream 10000 false Chr06N: 53361568-53371567 Panicum virgatum

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122187284 5267 Panicoideae View MSA
124570588 5269 Grass View MSA
122042056 5273 Angiosperm View MSA
121350076 5274 Embryophyte View MSA
123425500 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain