Gene : Pavir.5KG548600 P. virgatum v4.1
Defline:  (1 of 4) K17913 - carlactone synthase / all-trans-10'-apo-beta-carotenal 13,14-cleaving dioxygenase (CCD8) Genomic Order:  4980
Name:  ? Pavir.5KG548600 Secondary Identifier:  ? PAC:37629978
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1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvirgatum PWY-7101 Panicum virgatum pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pavir.5KG548600 0.5kb upstream 0.5kb upstream 4377 true Chr05K: 94747786-94752162 Panicum virgatum
Pavir.5KG548600 0.5kb upstream 0.5kb upstream 500 false Chr05K: 94751663-94752162 Panicum virgatum
Pavir.5KG548600 0.5kb downstream 0.5kb downstream 4377 true Chr05K: 94747286-94751662 Panicum virgatum
Pavir.5KG548600 0.5kb downstream 0.5kb downstream 500 false Chr05K: 94747286-94747785 Panicum virgatum
Pavir.5KG548600 1.0kb upstream 1.0kb upstream 4877 true Chr05K: 94747786-94752662 Panicum virgatum
Pavir.5KG548600 1.0kb upstream 1.0kb upstream 1000 false Chr05K: 94751663-94752662 Panicum virgatum
Pavir.5KG548600 1.0kb downstream 1.0kb downstream 4877 true Chr05K: 94746786-94751662 Panicum virgatum
Pavir.5KG548600 1.0kb downstream 1.0kb downstream 1000 false Chr05K: 94746786-94747785 Panicum virgatum
Pavir.5KG548600 2.0kb upstream 2.0kb upstream 5877 true Chr05K: 94747786-94753662 Panicum virgatum
Pavir.5KG548600 2.0kb upstream 2.0kb upstream 2000 false Chr05K: 94751663-94753662 Panicum virgatum
Pavir.5KG548600 2.0kb downstream 2.0kb downstream 5877 true Chr05K: 94745786-94751662 Panicum virgatum
Pavir.5KG548600 2.0kb downstream 2.0kb downstream 2000 false Chr05K: 94745786-94747785 Panicum virgatum
Pavir.5KG548600 5.0kb upstream 5.0kb upstream 8877 true Chr05K: 94747786-94756662 Panicum virgatum
Pavir.5KG548600 5.0kb upstream 5.0kb upstream 5000 false Chr05K: 94751663-94756662 Panicum virgatum
Pavir.5KG548600 5.0kb downstream 5.0kb downstream 8877 true Chr05K: 94742786-94751662 Panicum virgatum
Pavir.5KG548600 5.0kb downstream 5.0kb downstream 5000 false Chr05K: 94742786-94747785 Panicum virgatum
Pavir.5KG548600 10.0kb upstream 10.0kb upstream 13877 true Chr05K: 94747786-94761662 Panicum virgatum
Pavir.5KG548600 10.0kb upstream 10.0kb upstream 10000 false Chr05K: 94751663-94761662 Panicum virgatum
Pavir.5KG548600 10.0kb downstream 10.0kb downstream 13877 true Chr05K: 94737786-94751662 Panicum virgatum
Pavir.5KG548600 10.0kb downstream 10.0kb downstream 10000 false Chr05K: 94737786-94747785 Panicum virgatum

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122185928 5267 Panicoideae View MSA
124587364 5269 Grass View MSA
122048984 5273 Angiosperm View MSA
123428919 5275 Viridiplantae View MSA
121344649 5274 Embryophyte View MSA

0 Rna Seq Expressions

0 Strain