Gene : Thecc1EG025950 T. cacao v1.1
Defline:  (1 of 4) K04565 - superoxide dismutase, Cu-Zn family (SOD1) Genomic Order:  2520
Name:  ? Thecc1EG025950 Secondary Identifier:  ? PAC:27424733
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Tcacao DETOX1-PWY Theobroma cacao pathologic  
Tcacao DETOX1-PWY-1 Theobroma cacao pathologic  
Tcacao PWY-6854 Theobroma cacao pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG025950 0.5kb upstream 0.5kb upstream 6439 true scaffold_5: 35652443-35658881 Theobroma cacao
Thecc1EG025950 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 35658382-35658881 Theobroma cacao
Thecc1EG025950 0.5kb downstream 0.5kb downstream 6439 true scaffold_5: 35651943-35658381 Theobroma cacao
Thecc1EG025950 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 35651943-35652442 Theobroma cacao
Thecc1EG025950 1.0kb upstream 1.0kb upstream 6939 true scaffold_5: 35652443-35659381 Theobroma cacao
Thecc1EG025950 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 35658382-35659381 Theobroma cacao
Thecc1EG025950 1.0kb downstream 1.0kb downstream 6939 true scaffold_5: 35651443-35658381 Theobroma cacao
Thecc1EG025950 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 35651443-35652442 Theobroma cacao
Thecc1EG025950 2.0kb upstream 2.0kb upstream 7939 true scaffold_5: 35652443-35660381 Theobroma cacao
Thecc1EG025950 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 35658382-35660381 Theobroma cacao
Thecc1EG025950 2.0kb downstream 2.0kb downstream 7939 true scaffold_5: 35650443-35658381 Theobroma cacao
Thecc1EG025950 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 35650443-35652442 Theobroma cacao
Thecc1EG025950 5.0kb upstream 5.0kb upstream 10939 true scaffold_5: 35652443-35663381 Theobroma cacao
Thecc1EG025950 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 35658382-35663381 Theobroma cacao
Thecc1EG025950 5.0kb downstream 5.0kb downstream 10939 true scaffold_5: 35647443-35658381 Theobroma cacao
Thecc1EG025950 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 35647443-35652442 Theobroma cacao
Thecc1EG025950 10.0kb upstream 10.0kb upstream 15939 true scaffold_5: 35652443-35668381 Theobroma cacao
Thecc1EG025950 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 35658382-35668381 Theobroma cacao
Thecc1EG025950 10.0kb downstream 10.0kb downstream 15939 true scaffold_5: 35642443-35658381 Theobroma cacao
Thecc1EG025950 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 35642443-35652442 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123819949 5264 Brassicales-Malvales Singleton cluster - no MSA
124316178 5266 SBM Singleton cluster - no MSA
124165025 5268 Malvidae Singleton cluster - no MSA
124071759 5270 Rosid View MSA
123743890 5271 Pentapetalae View MSA
122797763 5272 Eudicot View MSA
122047736 5273 Angiosperm View MSA
121347419 5274 Embryophyte View MSA
123427939 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain