Gene : Pavir.7NG129600 P. virgatum v4.1
Defline:  (1 of 1) PTHR11451:SF33 - THREONINE--TRNA LIGASE, CYTOPLASMIC Genomic Order:  1168
Name:  ? Pavir.7NG129600 Secondary Identifier:  ? PAC:37620553
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Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvirgatum TRNA-CHARGING-PWY Panicum virgatum pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pavir.7NG129600 0.5kb upstream 0.5kb upstream 7644 true Chr07N: 36226223-36233866 Panicum virgatum
Pavir.7NG129600 0.5kb upstream 0.5kb upstream 500 false Chr07N: 36233367-36233866 Panicum virgatum
Pavir.7NG129600 0.5kb downstream 0.5kb downstream 7644 true Chr07N: 36225723-36233366 Panicum virgatum
Pavir.7NG129600 0.5kb downstream 0.5kb downstream 500 false Chr07N: 36225723-36226222 Panicum virgatum
Pavir.7NG129600 1.0kb upstream 1.0kb upstream 8144 true Chr07N: 36226223-36234366 Panicum virgatum
Pavir.7NG129600 1.0kb upstream 1.0kb upstream 1000 false Chr07N: 36233367-36234366 Panicum virgatum
Pavir.7NG129600 1.0kb downstream 1.0kb downstream 8144 true Chr07N: 36225223-36233366 Panicum virgatum
Pavir.7NG129600 1.0kb downstream 1.0kb downstream 1000 false Chr07N: 36225223-36226222 Panicum virgatum
Pavir.7NG129600 2.0kb upstream 2.0kb upstream 9144 true Chr07N: 36226223-36235366 Panicum virgatum
Pavir.7NG129600 2.0kb upstream 2.0kb upstream 2000 false Chr07N: 36233367-36235366 Panicum virgatum
Pavir.7NG129600 2.0kb downstream 2.0kb downstream 9144 true Chr07N: 36224223-36233366 Panicum virgatum
Pavir.7NG129600 2.0kb downstream 2.0kb downstream 2000 false Chr07N: 36224223-36226222 Panicum virgatum
Pavir.7NG129600 5.0kb upstream 5.0kb upstream 12144 true Chr07N: 36226223-36238366 Panicum virgatum
Pavir.7NG129600 5.0kb upstream 5.0kb upstream 5000 false Chr07N: 36233367-36238366 Panicum virgatum
Pavir.7NG129600 5.0kb downstream 5.0kb downstream 12144 true Chr07N: 36221223-36233366 Panicum virgatum
Pavir.7NG129600 5.0kb downstream 5.0kb downstream 5000 false Chr07N: 36221223-36226222 Panicum virgatum
Pavir.7NG129600 10.0kb upstream 10.0kb upstream 17144 true Chr07N: 36226223-36243366 Panicum virgatum
Pavir.7NG129600 10.0kb upstream 10.0kb upstream 10000 false Chr07N: 36233367-36243366 Panicum virgatum
Pavir.7NG129600 10.0kb downstream 10.0kb downstream 17144 true Chr07N: 36216223-36233366 Panicum virgatum
Pavir.7NG129600 10.0kb downstream 10.0kb downstream 10000 false Chr07N: 36216223-36226222 Panicum virgatum

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122026743 5273 Angiosperm View MSA
122091250 5267 Panicoideae Singleton cluster - no MSA
124388761 5269 Grass Singleton cluster - no MSA
121296521 5274 Embryophyte View MSA
123334669 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain