Gene : Thecc1EG028765 T. cacao v1.1
Defline:  (1 of 154) PTHR11439//PTHR11439:SF185 - GAG-POL-RELATED RETROTRANSPOSON // SUBFAMILY NOT NAMED Genomic Order:  923
Name:  ? Thecc1EG028765 Secondary Identifier:  ? PAC:27439129
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG028765 0.5kb upstream 0.5kb upstream 9415 true scaffold_6: 17977732-17987146 Theobroma cacao
Thecc1EG028765 0.5kb upstream 0.5kb upstream 500 false scaffold_6: 17977732-17978231 Theobroma cacao
Thecc1EG028765 0.5kb downstream 0.5kb downstream 9415 true scaffold_6: 17978232-17987646 Theobroma cacao
Thecc1EG028765 0.5kb downstream 0.5kb downstream 500 false scaffold_6: 17987147-17987646 Theobroma cacao
Thecc1EG028765 1.0kb upstream 1.0kb upstream 9915 true scaffold_6: 17977232-17987146 Theobroma cacao
Thecc1EG028765 1.0kb upstream 1.0kb upstream 1000 false scaffold_6: 17977232-17978231 Theobroma cacao
Thecc1EG028765 1.0kb downstream 1.0kb downstream 9915 true scaffold_6: 17978232-17988146 Theobroma cacao
Thecc1EG028765 1.0kb downstream 1.0kb downstream 1000 false scaffold_6: 17987147-17988146 Theobroma cacao
Thecc1EG028765 2.0kb upstream 2.0kb upstream 10915 true scaffold_6: 17976232-17987146 Theobroma cacao
Thecc1EG028765 2.0kb upstream 2.0kb upstream 2000 false scaffold_6: 17976232-17978231 Theobroma cacao
Thecc1EG028765 2.0kb downstream 2.0kb downstream 10915 true scaffold_6: 17978232-17989146 Theobroma cacao
Thecc1EG028765 2.0kb downstream 2.0kb downstream 2000 false scaffold_6: 17987147-17989146 Theobroma cacao
Thecc1EG028765 5.0kb upstream 5.0kb upstream 13915 true scaffold_6: 17973232-17987146 Theobroma cacao
Thecc1EG028765 5.0kb upstream 5.0kb upstream 5000 false scaffold_6: 17973232-17978231 Theobroma cacao
Thecc1EG028765 5.0kb downstream 5.0kb downstream 13915 true scaffold_6: 17978232-17992146 Theobroma cacao
Thecc1EG028765 5.0kb downstream 5.0kb downstream 5000 false scaffold_6: 17987147-17992146 Theobroma cacao
Thecc1EG028765 10.0kb upstream 10.0kb upstream 18915 true scaffold_6: 17968232-17987146 Theobroma cacao
Thecc1EG028765 10.0kb upstream 10.0kb upstream 10000 false scaffold_6: 17968232-17978231 Theobroma cacao
Thecc1EG028765 10.0kb downstream 10.0kb downstream 18915 true scaffold_6: 17978232-17997146 Theobroma cacao
Thecc1EG028765 10.0kb downstream 10.0kb downstream 10000 false scaffold_6: 17987147-17997146 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121782283 5273 Angiosperm View MSA
123821000 5264 Brassicales-Malvales Singleton cluster - no MSA
124317193 5266 SBM Singleton cluster - no MSA
124165950 5268 Malvidae Singleton cluster - no MSA
124038233 5270 Rosid View MSA
123752407 5271 Pentapetalae View MSA
122774538 5272 Eudicot View MSA
121053815 5274 Embryophyte View MSA
123093823 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain