Gene : Thecc1EG029464 T. cacao v1.1
Defline:  (1 of 1) PTHR11624:SF76 - PYRUVATE DEHYDROGENASE E1 COMPONENT SUBUNIT BETA-2, CHLOROPLASTIC-RELATED Genomic Order:  1465
Name:  ? Thecc1EG029464 Secondary Identifier:  ? PAC:27437947
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Tcacao PWY-5173 Theobroma cacao pathologic  
Tcacao PWY-5464 Theobroma cacao pathologic  
Tcacao PYRUVDEHYD-PWY Theobroma cacao pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG029464 0.5kb upstream 0.5kb upstream 3895 true scaffold_6: 22744782-22748676 Theobroma cacao
Thecc1EG029464 0.5kb upstream 0.5kb upstream 500 false scaffold_6: 22744782-22745281 Theobroma cacao
Thecc1EG029464 0.5kb downstream 0.5kb downstream 3895 true scaffold_6: 22745282-22749176 Theobroma cacao
Thecc1EG029464 0.5kb downstream 0.5kb downstream 500 false scaffold_6: 22748677-22749176 Theobroma cacao
Thecc1EG029464 1.0kb upstream 1.0kb upstream 4395 true scaffold_6: 22744282-22748676 Theobroma cacao
Thecc1EG029464 1.0kb upstream 1.0kb upstream 1000 false scaffold_6: 22744282-22745281 Theobroma cacao
Thecc1EG029464 1.0kb downstream 1.0kb downstream 4395 true scaffold_6: 22745282-22749676 Theobroma cacao
Thecc1EG029464 1.0kb downstream 1.0kb downstream 1000 false scaffold_6: 22748677-22749676 Theobroma cacao
Thecc1EG029464 2.0kb upstream 2.0kb upstream 5395 true scaffold_6: 22743282-22748676 Theobroma cacao
Thecc1EG029464 2.0kb upstream 2.0kb upstream 2000 false scaffold_6: 22743282-22745281 Theobroma cacao
Thecc1EG029464 2.0kb downstream 2.0kb downstream 5395 true scaffold_6: 22745282-22750676 Theobroma cacao
Thecc1EG029464 2.0kb downstream 2.0kb downstream 2000 false scaffold_6: 22748677-22750676 Theobroma cacao
Thecc1EG029464 5.0kb upstream 5.0kb upstream 8395 true scaffold_6: 22740282-22748676 Theobroma cacao
Thecc1EG029464 5.0kb upstream 5.0kb upstream 5000 false scaffold_6: 22740282-22745281 Theobroma cacao
Thecc1EG029464 5.0kb downstream 5.0kb downstream 8395 true scaffold_6: 22745282-22753676 Theobroma cacao
Thecc1EG029464 5.0kb downstream 5.0kb downstream 5000 false scaffold_6: 22748677-22753676 Theobroma cacao
Thecc1EG029464 10.0kb upstream 10.0kb upstream 13395 true scaffold_6: 22735282-22748676 Theobroma cacao
Thecc1EG029464 10.0kb upstream 10.0kb upstream 10000 false scaffold_6: 22735282-22745281 Theobroma cacao
Thecc1EG029464 10.0kb downstream 10.0kb downstream 13395 true scaffold_6: 22745282-22758676 Theobroma cacao
Thecc1EG029464 10.0kb downstream 10.0kb downstream 10000 false scaffold_6: 22748677-22758676 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123840734 5264 Brassicales-Malvales View MSA
124338432 5266 SBM View MSA
124241225 5268 Malvidae View MSA
124062960 5270 Rosid View MSA
123741192 5271 Pentapetalae View MSA
122797029 5272 Eudicot View MSA
122045305 5273 Angiosperm View MSA
121346397 5274 Embryophyte View MSA
123428672 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain