Gene : Thecc1EG029865 T. cacao v1.1
Defline:  (1 of 2) PTHR11771//PTHR11771:SF56 - LIPOXYGENASE // SUBFAMILY NOT NAMED Genomic Order:  1827
Name:  ? Thecc1EG029865 Secondary Identifier:  ? PAC:27440345
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Tcacao PWY-5409 Theobroma cacao pathologic  
Tcacao PWY-5410 Theobroma cacao pathologic  
Tcacao PWY-735 Theobroma cacao pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG029865 0.5kb upstream 0.5kb upstream 10643 true scaffold_6: 24688951-24699593 Theobroma cacao
Thecc1EG029865 0.5kb upstream 0.5kb upstream 500 false scaffold_6: 24699094-24699593 Theobroma cacao
Thecc1EG029865 0.5kb downstream 0.5kb downstream 10643 true scaffold_6: 24688451-24699093 Theobroma cacao
Thecc1EG029865 0.5kb downstream 0.5kb downstream 500 false scaffold_6: 24688451-24688950 Theobroma cacao
Thecc1EG029865 1.0kb upstream 1.0kb upstream 11143 true scaffold_6: 24688951-24700093 Theobroma cacao
Thecc1EG029865 1.0kb upstream 1.0kb upstream 1000 false scaffold_6: 24699094-24700093 Theobroma cacao
Thecc1EG029865 1.0kb downstream 1.0kb downstream 11143 true scaffold_6: 24687951-24699093 Theobroma cacao
Thecc1EG029865 1.0kb downstream 1.0kb downstream 1000 false scaffold_6: 24687951-24688950 Theobroma cacao
Thecc1EG029865 2.0kb upstream 2.0kb upstream 12143 true scaffold_6: 24688951-24701093 Theobroma cacao
Thecc1EG029865 2.0kb upstream 2.0kb upstream 2000 false scaffold_6: 24699094-24701093 Theobroma cacao
Thecc1EG029865 2.0kb downstream 2.0kb downstream 12143 true scaffold_6: 24686951-24699093 Theobroma cacao
Thecc1EG029865 2.0kb downstream 2.0kb downstream 2000 false scaffold_6: 24686951-24688950 Theobroma cacao
Thecc1EG029865 5.0kb upstream 5.0kb upstream 15143 true scaffold_6: 24688951-24704093 Theobroma cacao
Thecc1EG029865 5.0kb upstream 5.0kb upstream 5000 false scaffold_6: 24699094-24704093 Theobroma cacao
Thecc1EG029865 5.0kb downstream 5.0kb downstream 15143 true scaffold_6: 24683951-24699093 Theobroma cacao
Thecc1EG029865 5.0kb downstream 5.0kb downstream 5000 false scaffold_6: 24683951-24688950 Theobroma cacao
Thecc1EG029865 10.0kb upstream 10.0kb upstream 20143 true scaffold_6: 24688951-24709093 Theobroma cacao
Thecc1EG029865 10.0kb upstream 10.0kb upstream 10000 false scaffold_6: 24699094-24709093 Theobroma cacao
Thecc1EG029865 10.0kb downstream 10.0kb downstream 20143 true scaffold_6: 24678951-24699093 Theobroma cacao
Thecc1EG029865 10.0kb downstream 10.0kb downstream 10000 false scaffold_6: 24678951-24688950 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123821226 5264 Brassicales-Malvales Singleton cluster - no MSA
124317413 5266 SBM Singleton cluster - no MSA
124254155 5268 Malvidae View MSA
124060591 5270 Rosid View MSA
123743150 5271 Pentapetalae View MSA
122789243 5272 Eudicot View MSA
122051623 5273 Angiosperm View MSA
123429188 5275 Viridiplantae View MSA
121351701 5274 Embryophyte View MSA

0 Rna Seq Expressions

0 Strain