Gene : Thecc1EG029883 T. cacao v1.1
Defline:  (1 of 1) PTHR12313//PTHR12313:SF6 - RNF5 // SUBFAMILY NOT NAMED Genomic Order:  1841
Name:  ? Thecc1EG029883 Secondary Identifier:  ? PAC:27439041
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Tcacao PWY-7511 Theobroma cacao pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG029883 0.5kb upstream 0.5kb upstream 3148 true scaffold_6: 24766076-24769223 Theobroma cacao
Thecc1EG029883 0.5kb upstream 0.5kb upstream 500 false scaffold_6: 24766076-24766575 Theobroma cacao
Thecc1EG029883 0.5kb downstream 0.5kb downstream 3148 true scaffold_6: 24766576-24769723 Theobroma cacao
Thecc1EG029883 0.5kb downstream 0.5kb downstream 500 false scaffold_6: 24769224-24769723 Theobroma cacao
Thecc1EG029883 1.0kb upstream 1.0kb upstream 3648 true scaffold_6: 24765576-24769223 Theobroma cacao
Thecc1EG029883 1.0kb upstream 1.0kb upstream 1000 false scaffold_6: 24765576-24766575 Theobroma cacao
Thecc1EG029883 1.0kb downstream 1.0kb downstream 3648 true scaffold_6: 24766576-24770223 Theobroma cacao
Thecc1EG029883 1.0kb downstream 1.0kb downstream 1000 false scaffold_6: 24769224-24770223 Theobroma cacao
Thecc1EG029883 2.0kb upstream 2.0kb upstream 4648 true scaffold_6: 24764576-24769223 Theobroma cacao
Thecc1EG029883 2.0kb upstream 2.0kb upstream 2000 false scaffold_6: 24764576-24766575 Theobroma cacao
Thecc1EG029883 2.0kb downstream 2.0kb downstream 4648 true scaffold_6: 24766576-24771223 Theobroma cacao
Thecc1EG029883 2.0kb downstream 2.0kb downstream 2000 false scaffold_6: 24769224-24771223 Theobroma cacao
Thecc1EG029883 5.0kb upstream 5.0kb upstream 7648 true scaffold_6: 24761576-24769223 Theobroma cacao
Thecc1EG029883 5.0kb upstream 5.0kb upstream 5000 false scaffold_6: 24761576-24766575 Theobroma cacao
Thecc1EG029883 5.0kb downstream 5.0kb downstream 7648 true scaffold_6: 24766576-24774223 Theobroma cacao
Thecc1EG029883 5.0kb downstream 5.0kb downstream 5000 false scaffold_6: 24769224-24774223 Theobroma cacao
Thecc1EG029883 10.0kb upstream 10.0kb upstream 12648 true scaffold_6: 24756576-24769223 Theobroma cacao
Thecc1EG029883 10.0kb upstream 10.0kb upstream 10000 false scaffold_6: 24756576-24766575 Theobroma cacao
Thecc1EG029883 10.0kb downstream 10.0kb downstream 12648 true scaffold_6: 24766576-24779223 Theobroma cacao
Thecc1EG029883 10.0kb downstream 10.0kb downstream 10000 false scaffold_6: 24769224-24779223 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123826866 5264 Brassicales-Malvales View MSA
124348972 5266 SBM View MSA
124252908 5268 Malvidae View MSA
124070721 5270 Rosid View MSA
123750753 5271 Pentapetalae View MSA
122796389 5272 Eudicot View MSA
122051949 5273 Angiosperm View MSA
121312825 5274 Embryophyte View MSA
123428794 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain