Gene : Pavir.4KG129900 P. virgatum v4.1
Defline:  (1 of 3) PTHR12526:SF304 - STARCH SYNTHASE 4, CHLOROPLASTIC/AMYLOPLASTIC-RELATED Genomic Order:  1841
Name:  ? Pavir.4KG129900 Secondary Identifier:  ? PAC:37605735
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2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvirgatum GLYCOGENSYNTH-PWY Panicum virgatum pathologic  
Pvirgatum PWY-622 Panicum virgatum pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pavir.4KG129900 0.5kb upstream 0.5kb upstream 8593 true Chr04K: 32213725-32222317 Panicum virgatum
Pavir.4KG129900 0.5kb upstream 0.5kb upstream 500 false Chr04K: 32221818-32222317 Panicum virgatum
Pavir.4KG129900 0.5kb downstream 0.5kb downstream 8593 true Chr04K: 32213225-32221817 Panicum virgatum
Pavir.4KG129900 0.5kb downstream 0.5kb downstream 500 false Chr04K: 32213225-32213724 Panicum virgatum
Pavir.4KG129900 1.0kb upstream 1.0kb upstream 9093 true Chr04K: 32213725-32222817 Panicum virgatum
Pavir.4KG129900 1.0kb upstream 1.0kb upstream 1000 false Chr04K: 32221818-32222817 Panicum virgatum
Pavir.4KG129900 1.0kb downstream 1.0kb downstream 9093 true Chr04K: 32212725-32221817 Panicum virgatum
Pavir.4KG129900 1.0kb downstream 1.0kb downstream 1000 false Chr04K: 32212725-32213724 Panicum virgatum
Pavir.4KG129900 2.0kb upstream 2.0kb upstream 10093 true Chr04K: 32213725-32223817 Panicum virgatum
Pavir.4KG129900 2.0kb upstream 2.0kb upstream 2000 false Chr04K: 32221818-32223817 Panicum virgatum
Pavir.4KG129900 2.0kb downstream 2.0kb downstream 10093 true Chr04K: 32211725-32221817 Panicum virgatum
Pavir.4KG129900 2.0kb downstream 2.0kb downstream 2000 false Chr04K: 32211725-32213724 Panicum virgatum
Pavir.4KG129900 5.0kb upstream 5.0kb upstream 13093 true Chr04K: 32213725-32226817 Panicum virgatum
Pavir.4KG129900 5.0kb upstream 5.0kb upstream 5000 false Chr04K: 32221818-32226817 Panicum virgatum
Pavir.4KG129900 5.0kb downstream 5.0kb downstream 13093 true Chr04K: 32208725-32221817 Panicum virgatum
Pavir.4KG129900 5.0kb downstream 5.0kb downstream 5000 false Chr04K: 32208725-32213724 Panicum virgatum
Pavir.4KG129900 10.0kb upstream 10.0kb upstream 18093 true Chr04K: 32213725-32231817 Panicum virgatum
Pavir.4KG129900 10.0kb upstream 10.0kb upstream 10000 false Chr04K: 32221818-32231817 Panicum virgatum
Pavir.4KG129900 10.0kb downstream 10.0kb downstream 18093 true Chr04K: 32203725-32221817 Panicum virgatum
Pavir.4KG129900 10.0kb downstream 10.0kb downstream 10000 false Chr04K: 32203725-32213724 Panicum virgatum

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122087294 5267 Panicoideae Singleton cluster - no MSA
124385123 5269 Grass Singleton cluster - no MSA
122042885 5273 Angiosperm View MSA
121344527 5274 Embryophyte View MSA
123428648 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain