Gene : Thecc1EG032343 T. cacao v1.1
Defline:  (1 of 2) PTHR10543:SF42 - 9-CIS-EPOXYCAROTENOID DIOXYGENASE NCED2, CHLOROPLASTIC-RELATED Genomic Order:  1378
Name:  ? Thecc1EG032343 Secondary Identifier:  ? PAC:27445510
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Tcacao PWY-695 Theobroma cacao pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG032343 0.5kb upstream 0.5kb upstream 3094 true scaffold_7: 10274598-10277691 Theobroma cacao
Thecc1EG032343 0.5kb upstream 0.5kb upstream 500 false scaffold_7: 10274598-10275097 Theobroma cacao
Thecc1EG032343 0.5kb downstream 0.5kb downstream 3094 true scaffold_7: 10275098-10278191 Theobroma cacao
Thecc1EG032343 0.5kb downstream 0.5kb downstream 500 false scaffold_7: 10277692-10278191 Theobroma cacao
Thecc1EG032343 1.0kb upstream 1.0kb upstream 3594 true scaffold_7: 10274098-10277691 Theobroma cacao
Thecc1EG032343 1.0kb upstream 1.0kb upstream 1000 false scaffold_7: 10274098-10275097 Theobroma cacao
Thecc1EG032343 1.0kb downstream 1.0kb downstream 3594 true scaffold_7: 10275098-10278691 Theobroma cacao
Thecc1EG032343 1.0kb downstream 1.0kb downstream 1000 false scaffold_7: 10277692-10278691 Theobroma cacao
Thecc1EG032343 2.0kb upstream 2.0kb upstream 4594 true scaffold_7: 10273098-10277691 Theobroma cacao
Thecc1EG032343 2.0kb upstream 2.0kb upstream 2000 false scaffold_7: 10273098-10275097 Theobroma cacao
Thecc1EG032343 2.0kb downstream 2.0kb downstream 4594 true scaffold_7: 10275098-10279691 Theobroma cacao
Thecc1EG032343 2.0kb downstream 2.0kb downstream 2000 false scaffold_7: 10277692-10279691 Theobroma cacao
Thecc1EG032343 5.0kb upstream 5.0kb upstream 7594 true scaffold_7: 10270098-10277691 Theobroma cacao
Thecc1EG032343 5.0kb upstream 5.0kb upstream 5000 false scaffold_7: 10270098-10275097 Theobroma cacao
Thecc1EG032343 5.0kb downstream 5.0kb downstream 7594 true scaffold_7: 10275098-10282691 Theobroma cacao
Thecc1EG032343 5.0kb downstream 5.0kb downstream 5000 false scaffold_7: 10277692-10282691 Theobroma cacao
Thecc1EG032343 10.0kb upstream 10.0kb upstream 12594 true scaffold_7: 10265098-10277691 Theobroma cacao
Thecc1EG032343 10.0kb upstream 10.0kb upstream 10000 false scaffold_7: 10265098-10275097 Theobroma cacao
Thecc1EG032343 10.0kb downstream 10.0kb downstream 12594 true scaffold_7: 10275098-10287691 Theobroma cacao
Thecc1EG032343 10.0kb downstream 10.0kb downstream 10000 false scaffold_7: 10277692-10287691 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123839521 5264 Brassicales-Malvales View MSA
124350973 5266 SBM View MSA
124250838 5268 Malvidae View MSA
124068526 5270 Rosid View MSA
123741505 5271 Pentapetalae View MSA
122796781 5272 Eudicot View MSA
122050852 5273 Angiosperm View MSA
121350265 5274 Embryophyte View MSA
123428777 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain