Gene : Thecc1EG034559 T. cacao v1.1
Defline:  (1 of 1) PTHR11680:SF12 - SERINE HYDROXYMETHYLTRANSFERASE 2, MITOCHONDRIAL Genomic Order:  728
Name:  ? Thecc1EG034559 Secondary Identifier:  ? PAC:27457879
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Sequence Feature Displayer

Ontology Annotation Displayer

4 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Tcacao GLYSYN-PWY Theobroma cacao pathologic  
Tcacao PWY-2161 Theobroma cacao pathologic  
Tcacao PWY-3841 Theobroma cacao pathologic  
Tcacao SER-GLYSYN-PWY Theobroma cacao pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG034559 0.5kb upstream 0.5kb upstream 7394 true scaffold_8: 3668088-3675481 Theobroma cacao
Thecc1EG034559 0.5kb upstream 0.5kb upstream 500 false scaffold_8: 3668088-3668587 Theobroma cacao
Thecc1EG034559 0.5kb downstream 0.5kb downstream 7394 true scaffold_8: 3668588-3675981 Theobroma cacao
Thecc1EG034559 0.5kb downstream 0.5kb downstream 500 false scaffold_8: 3675482-3675981 Theobroma cacao
Thecc1EG034559 1.0kb upstream 1.0kb upstream 7894 true scaffold_8: 3667588-3675481 Theobroma cacao
Thecc1EG034559 1.0kb upstream 1.0kb upstream 1000 false scaffold_8: 3667588-3668587 Theobroma cacao
Thecc1EG034559 1.0kb downstream 1.0kb downstream 7894 true scaffold_8: 3668588-3676481 Theobroma cacao
Thecc1EG034559 1.0kb downstream 1.0kb downstream 1000 false scaffold_8: 3675482-3676481 Theobroma cacao
Thecc1EG034559 2.0kb upstream 2.0kb upstream 8894 true scaffold_8: 3666588-3675481 Theobroma cacao
Thecc1EG034559 2.0kb upstream 2.0kb upstream 2000 false scaffold_8: 3666588-3668587 Theobroma cacao
Thecc1EG034559 2.0kb downstream 2.0kb downstream 8894 true scaffold_8: 3668588-3677481 Theobroma cacao
Thecc1EG034559 2.0kb downstream 2.0kb downstream 2000 false scaffold_8: 3675482-3677481 Theobroma cacao
Thecc1EG034559 5.0kb upstream 5.0kb upstream 11894 true scaffold_8: 3663588-3675481 Theobroma cacao
Thecc1EG034559 5.0kb upstream 5.0kb upstream 5000 false scaffold_8: 3663588-3668587 Theobroma cacao
Thecc1EG034559 5.0kb downstream 5.0kb downstream 11894 true scaffold_8: 3668588-3680481 Theobroma cacao
Thecc1EG034559 5.0kb downstream 5.0kb downstream 5000 false scaffold_8: 3675482-3680481 Theobroma cacao
Thecc1EG034559 10.0kb upstream 10.0kb upstream 16894 true scaffold_8: 3658588-3675481 Theobroma cacao
Thecc1EG034559 10.0kb upstream 10.0kb upstream 10000 false scaffold_8: 3658588-3668587 Theobroma cacao
Thecc1EG034559 10.0kb downstream 10.0kb downstream 16894 true scaffold_8: 3668588-3685481 Theobroma cacao
Thecc1EG034559 10.0kb downstream 10.0kb downstream 10000 false scaffold_8: 3675482-3685481 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123827515 5264 Brassicales-Malvales View MSA
124339433 5266 SBM View MSA
124239143 5268 Malvidae View MSA
124064979 5270 Rosid View MSA
123747223 5271 Pentapetalae View MSA
122789073 5272 Eudicot View MSA
122045639 5273 Angiosperm View MSA
121346714 5274 Embryophyte View MSA
123424879 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain