Gene : Thecc1EG046891 T. cacao v1.1
Defline:  (1 of 5) 4.2.2.23 - Rhamnogalacturonan endolyase / Rhamnogalacturonase B Genomic Order:  716
Name:  ? Thecc1EG046891 Secondary Identifier:  ? PAC:27456855
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG046891 0.5kb upstream 0.5kb upstream 5115 true scaffold_8: 3587388-3592502 Theobroma cacao
Thecc1EG046891 0.5kb upstream 0.5kb upstream 500 false scaffold_8: 3592003-3592502 Theobroma cacao
Thecc1EG046891 0.5kb downstream 0.5kb downstream 5115 true scaffold_8: 3586888-3592002 Theobroma cacao
Thecc1EG046891 0.5kb downstream 0.5kb downstream 500 false scaffold_8: 3586888-3587387 Theobroma cacao
Thecc1EG046891 1.0kb upstream 1.0kb upstream 5615 true scaffold_8: 3587388-3593002 Theobroma cacao
Thecc1EG046891 1.0kb upstream 1.0kb upstream 1000 false scaffold_8: 3592003-3593002 Theobroma cacao
Thecc1EG046891 1.0kb downstream 1.0kb downstream 5615 true scaffold_8: 3586388-3592002 Theobroma cacao
Thecc1EG046891 1.0kb downstream 1.0kb downstream 1000 false scaffold_8: 3586388-3587387 Theobroma cacao
Thecc1EG046891 2.0kb upstream 2.0kb upstream 6615 true scaffold_8: 3587388-3594002 Theobroma cacao
Thecc1EG046891 2.0kb upstream 2.0kb upstream 2000 false scaffold_8: 3592003-3594002 Theobroma cacao
Thecc1EG046891 2.0kb downstream 2.0kb downstream 6615 true scaffold_8: 3585388-3592002 Theobroma cacao
Thecc1EG046891 2.0kb downstream 2.0kb downstream 2000 false scaffold_8: 3585388-3587387 Theobroma cacao
Thecc1EG046891 5.0kb upstream 5.0kb upstream 9615 true scaffold_8: 3587388-3597002 Theobroma cacao
Thecc1EG046891 5.0kb upstream 5.0kb upstream 5000 false scaffold_8: 3592003-3597002 Theobroma cacao
Thecc1EG046891 5.0kb downstream 5.0kb downstream 9615 true scaffold_8: 3582388-3592002 Theobroma cacao
Thecc1EG046891 5.0kb downstream 5.0kb downstream 5000 false scaffold_8: 3582388-3587387 Theobroma cacao
Thecc1EG046891 10.0kb upstream 10.0kb upstream 14615 true scaffold_8: 3587388-3602002 Theobroma cacao
Thecc1EG046891 10.0kb upstream 10.0kb upstream 10000 false scaffold_8: 3592003-3602002 Theobroma cacao
Thecc1EG046891 10.0kb downstream 10.0kb downstream 14615 true scaffold_8: 3577388-3592002 Theobroma cacao
Thecc1EG046891 10.0kb downstream 10.0kb downstream 10000 false scaffold_8: 3577388-3587387 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041153 5273 Angiosperm View MSA
123836102 5264 Brassicales-Malvales View MSA
124345052 5266 SBM View MSA
124240511 5268 Malvidae View MSA
124067836 5270 Rosid View MSA
123741436 5271 Pentapetalae View MSA
122791943 5272 Eudicot View MSA
121347296 5274 Embryophyte View MSA
123380523 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain