Gene : Thecc1EG036728 T. cacao v1.1
Defline:  (1 of 47) PF14244 - gag-polypeptide of LTR copia-type (UBN2_3) Genomic Order:  2037
Name:  ? Thecc1EG036728 Secondary Identifier:  ? PAC:27456593
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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Cufflinks Score Displayer

 

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG036728 0.5kb upstream 0.5kb upstream 2114 true scaffold_8: 21459760-21461873 Theobroma cacao
Thecc1EG036728 0.5kb upstream 0.5kb upstream 500 false scaffold_8: 21459760-21460259 Theobroma cacao
Thecc1EG036728 0.5kb downstream 0.5kb downstream 2114 true scaffold_8: 21460260-21462373 Theobroma cacao
Thecc1EG036728 0.5kb downstream 0.5kb downstream 500 false scaffold_8: 21461874-21462373 Theobroma cacao
Thecc1EG036728 1.0kb upstream 1.0kb upstream 2614 true scaffold_8: 21459260-21461873 Theobroma cacao
Thecc1EG036728 1.0kb upstream 1.0kb upstream 1000 false scaffold_8: 21459260-21460259 Theobroma cacao
Thecc1EG036728 1.0kb downstream 1.0kb downstream 2614 true scaffold_8: 21460260-21462873 Theobroma cacao
Thecc1EG036728 1.0kb downstream 1.0kb downstream 1000 false scaffold_8: 21461874-21462873 Theobroma cacao
Thecc1EG036728 2.0kb upstream 2.0kb upstream 3614 true scaffold_8: 21458260-21461873 Theobroma cacao
Thecc1EG036728 2.0kb upstream 2.0kb upstream 2000 false scaffold_8: 21458260-21460259 Theobroma cacao
Thecc1EG036728 2.0kb downstream 2.0kb downstream 3614 true scaffold_8: 21460260-21463873 Theobroma cacao
Thecc1EG036728 2.0kb downstream 2.0kb downstream 2000 false scaffold_8: 21461874-21463873 Theobroma cacao
Thecc1EG036728 5.0kb upstream 5.0kb upstream 6614 true scaffold_8: 21455260-21461873 Theobroma cacao
Thecc1EG036728 5.0kb upstream 5.0kb upstream 5000 false scaffold_8: 21455260-21460259 Theobroma cacao
Thecc1EG036728 5.0kb downstream 5.0kb downstream 6614 true scaffold_8: 21460260-21466873 Theobroma cacao
Thecc1EG036728 5.0kb downstream 5.0kb downstream 5000 false scaffold_8: 21461874-21466873 Theobroma cacao
Thecc1EG036728 10.0kb upstream 10.0kb upstream 11614 true scaffold_8: 21450260-21461873 Theobroma cacao
Thecc1EG036728 10.0kb upstream 10.0kb upstream 10000 false scaffold_8: 21450260-21460259 Theobroma cacao
Thecc1EG036728 10.0kb downstream 10.0kb downstream 11614 true scaffold_8: 21460260-21471873 Theobroma cacao
Thecc1EG036728 10.0kb downstream 10.0kb downstream 10000 false scaffold_8: 21461874-21471873 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123822006 5264 Brassicales-Malvales Singleton cluster - no MSA
124318161 5266 SBM Singleton cluster - no MSA
124254257 5268 Malvidae View MSA
124074671 5270 Rosid View MSA
123753620 5271 Pentapetalae View MSA
122797847 5272 Eudicot View MSA
122051084 5273 Angiosperm View MSA
123429186 5275 Viridiplantae View MSA
121351752 5274 Embryophyte View MSA

0 Rna Seq Expressions

0 Strain