Gene : Thecc1EG037008 T. cacao v1.1
Defline:  (1 of 1) PTHR23079//PTHR23079:SF1 - RNA-DEPENDENT RNA POLYMERASE // PROTEIN RRF-3 Genomic Order:  247
Name:  ? Thecc1EG037008 Secondary Identifier:  ? PAC:27430032
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG037008 0.5kb upstream 0.5kb upstream 14269 true scaffold_9: 1335953-1350221 Theobroma cacao
Thecc1EG037008 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 1349722-1350221 Theobroma cacao
Thecc1EG037008 0.5kb downstream 0.5kb downstream 14269 true scaffold_9: 1335453-1349721 Theobroma cacao
Thecc1EG037008 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 1335453-1335952 Theobroma cacao
Thecc1EG037008 1.0kb upstream 1.0kb upstream 14769 true scaffold_9: 1335953-1350721 Theobroma cacao
Thecc1EG037008 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 1349722-1350721 Theobroma cacao
Thecc1EG037008 1.0kb downstream 1.0kb downstream 14769 true scaffold_9: 1334953-1349721 Theobroma cacao
Thecc1EG037008 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 1334953-1335952 Theobroma cacao
Thecc1EG037008 2.0kb upstream 2.0kb upstream 15769 true scaffold_9: 1335953-1351721 Theobroma cacao
Thecc1EG037008 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 1349722-1351721 Theobroma cacao
Thecc1EG037008 2.0kb downstream 2.0kb downstream 15769 true scaffold_9: 1333953-1349721 Theobroma cacao
Thecc1EG037008 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 1333953-1335952 Theobroma cacao
Thecc1EG037008 5.0kb upstream 5.0kb upstream 18769 true scaffold_9: 1335953-1354721 Theobroma cacao
Thecc1EG037008 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 1349722-1354721 Theobroma cacao
Thecc1EG037008 5.0kb downstream 5.0kb downstream 18769 true scaffold_9: 1330953-1349721 Theobroma cacao
Thecc1EG037008 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 1330953-1335952 Theobroma cacao
Thecc1EG037008 10.0kb upstream 10.0kb upstream 23769 true scaffold_9: 1335953-1359721 Theobroma cacao
Thecc1EG037008 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 1349722-1359721 Theobroma cacao
Thecc1EG037008 10.0kb downstream 10.0kb downstream 23769 true scaffold_9: 1325953-1349721 Theobroma cacao
Thecc1EG037008 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 1325953-1335952 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123838821 5264 Brassicales-Malvales View MSA
124322501 5266 SBM View MSA
124236891 5268 Malvidae View MSA
124063849 5270 Rosid View MSA
123737046 5271 Pentapetalae View MSA
122789317 5272 Eudicot View MSA
122045596 5273 Angiosperm View MSA
121346387 5274 Embryophyte View MSA
123428546 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain