Gene : Thecc1EG040245 T. cacao v1.1
Defline:  (1 of 1) PTHR23163//PTHR23163:SF0 - RING FINGER PROTEIN-RELATED // E3 UBIQUITIN-PROTEIN LIGASE BRE1 Genomic Order:  2100
Name:  ? Thecc1EG040245 Secondary Identifier:  ? PAC:27431006
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Tcacao PWY-7511 Theobroma cacao pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG040245 0.5kb upstream 0.5kb upstream 12754 true scaffold_9: 28279272-28292025 Theobroma cacao
Thecc1EG040245 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 28291526-28292025 Theobroma cacao
Thecc1EG040245 0.5kb downstream 0.5kb downstream 12754 true scaffold_9: 28278772-28291525 Theobroma cacao
Thecc1EG040245 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 28278772-28279271 Theobroma cacao
Thecc1EG040245 1.0kb upstream 1.0kb upstream 13254 true scaffold_9: 28279272-28292525 Theobroma cacao
Thecc1EG040245 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 28291526-28292525 Theobroma cacao
Thecc1EG040245 1.0kb downstream 1.0kb downstream 13254 true scaffold_9: 28278272-28291525 Theobroma cacao
Thecc1EG040245 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 28278272-28279271 Theobroma cacao
Thecc1EG040245 2.0kb upstream 2.0kb upstream 14254 true scaffold_9: 28279272-28293525 Theobroma cacao
Thecc1EG040245 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 28291526-28293525 Theobroma cacao
Thecc1EG040245 2.0kb downstream 2.0kb downstream 14254 true scaffold_9: 28277272-28291525 Theobroma cacao
Thecc1EG040245 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 28277272-28279271 Theobroma cacao
Thecc1EG040245 5.0kb upstream 5.0kb upstream 17254 true scaffold_9: 28279272-28296525 Theobroma cacao
Thecc1EG040245 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 28291526-28296525 Theobroma cacao
Thecc1EG040245 5.0kb downstream 5.0kb downstream 17254 true scaffold_9: 28274272-28291525 Theobroma cacao
Thecc1EG040245 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 28274272-28279271 Theobroma cacao
Thecc1EG040245 10.0kb upstream 10.0kb upstream 22254 true scaffold_9: 28279272-28301525 Theobroma cacao
Thecc1EG040245 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 28291526-28301525 Theobroma cacao
Thecc1EG040245 10.0kb downstream 10.0kb downstream 22254 true scaffold_9: 28269272-28291525 Theobroma cacao
Thecc1EG040245 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 28269272-28279271 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123830825 5264 Brassicales-Malvales View MSA
124341385 5266 SBM View MSA
124238716 5268 Malvidae View MSA
124068574 5270 Rosid View MSA
123753299 5271 Pentapetalae View MSA
122793673 5272 Eudicot View MSA
122042098 5273 Angiosperm View MSA
121349326 5274 Embryophyte View MSA
123423997 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain