Gene : Thecc1EG040196 T. cacao v1.1
Defline:  (1 of 3) K02291 - phytoene synthase (crtB) Genomic Order:  2085
Name:  ? Thecc1EG040196 Secondary Identifier:  ? PAC:27430208
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Tcacao CAROTENOID-PWY Theobroma cacao pathologic  
Tcacao PWY-6475 Theobroma cacao pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG040196 0.5kb upstream 0.5kb upstream 3126 true scaffold_9: 27850049-27853174 Theobroma cacao
Thecc1EG040196 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 27850049-27850548 Theobroma cacao
Thecc1EG040196 0.5kb downstream 0.5kb downstream 3126 true scaffold_9: 27850549-27853674 Theobroma cacao
Thecc1EG040196 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 27853175-27853674 Theobroma cacao
Thecc1EG040196 1.0kb upstream 1.0kb upstream 3626 true scaffold_9: 27849549-27853174 Theobroma cacao
Thecc1EG040196 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 27849549-27850548 Theobroma cacao
Thecc1EG040196 1.0kb downstream 1.0kb downstream 3626 true scaffold_9: 27850549-27854174 Theobroma cacao
Thecc1EG040196 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 27853175-27854174 Theobroma cacao
Thecc1EG040196 2.0kb upstream 2.0kb upstream 4626 true scaffold_9: 27848549-27853174 Theobroma cacao
Thecc1EG040196 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 27848549-27850548 Theobroma cacao
Thecc1EG040196 2.0kb downstream 2.0kb downstream 4626 true scaffold_9: 27850549-27855174 Theobroma cacao
Thecc1EG040196 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 27853175-27855174 Theobroma cacao
Thecc1EG040196 5.0kb upstream 5.0kb upstream 7626 true scaffold_9: 27845549-27853174 Theobroma cacao
Thecc1EG040196 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 27845549-27850548 Theobroma cacao
Thecc1EG040196 5.0kb downstream 5.0kb downstream 7626 true scaffold_9: 27850549-27858174 Theobroma cacao
Thecc1EG040196 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 27853175-27858174 Theobroma cacao
Thecc1EG040196 10.0kb upstream 10.0kb upstream 12626 true scaffold_9: 27840549-27853174 Theobroma cacao
Thecc1EG040196 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 27840549-27850548 Theobroma cacao
Thecc1EG040196 10.0kb downstream 10.0kb downstream 12626 true scaffold_9: 27850549-27863174 Theobroma cacao
Thecc1EG040196 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 27853175-27863174 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121791897 5273 Angiosperm View MSA
123826675 5264 Brassicales-Malvales View MSA
124347369 5266 SBM View MSA
124245984 5268 Malvidae View MSA
124070779 5270 Rosid View MSA
123742301 5271 Pentapetalae View MSA
122795137 5272 Eudicot View MSA
121063168 5274 Embryophyte View MSA
123102943 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain