Gene : Thecc1EG040033 T. cacao v1.1
Defline:  (1 of 1) PTHR21266:SF25 - PROTOCHLOROPHYLLIDE-DEPENDENT TRANSLOCON COMPONENT 52, CHLOROPLASTIC Genomic Order:  2043
Name:  ? Thecc1EG040033 Secondary Identifier:  ? PAC:27427235
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Tcacao PWY-5098 Theobroma cacao pathologic  
Tcacao PWY-6927 Theobroma cacao pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG040033 0.5kb upstream 0.5kb upstream 4555 true scaffold_9: 26238801-26243355 Theobroma cacao
Thecc1EG040033 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 26242856-26243355 Theobroma cacao
Thecc1EG040033 0.5kb downstream 0.5kb downstream 4555 true scaffold_9: 26238301-26242855 Theobroma cacao
Thecc1EG040033 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 26238301-26238800 Theobroma cacao
Thecc1EG040033 1.0kb upstream 1.0kb upstream 5055 true scaffold_9: 26238801-26243855 Theobroma cacao
Thecc1EG040033 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 26242856-26243855 Theobroma cacao
Thecc1EG040033 1.0kb downstream 1.0kb downstream 5055 true scaffold_9: 26237801-26242855 Theobroma cacao
Thecc1EG040033 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 26237801-26238800 Theobroma cacao
Thecc1EG040033 2.0kb upstream 2.0kb upstream 6055 true scaffold_9: 26238801-26244855 Theobroma cacao
Thecc1EG040033 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 26242856-26244855 Theobroma cacao
Thecc1EG040033 2.0kb downstream 2.0kb downstream 6055 true scaffold_9: 26236801-26242855 Theobroma cacao
Thecc1EG040033 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 26236801-26238800 Theobroma cacao
Thecc1EG040033 5.0kb upstream 5.0kb upstream 9055 true scaffold_9: 26238801-26247855 Theobroma cacao
Thecc1EG040033 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 26242856-26247855 Theobroma cacao
Thecc1EG040033 5.0kb downstream 5.0kb downstream 9055 true scaffold_9: 26233801-26242855 Theobroma cacao
Thecc1EG040033 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 26233801-26238800 Theobroma cacao
Thecc1EG040033 10.0kb upstream 10.0kb upstream 14055 true scaffold_9: 26238801-26252855 Theobroma cacao
Thecc1EG040033 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 26242856-26252855 Theobroma cacao
Thecc1EG040033 10.0kb downstream 10.0kb downstream 14055 true scaffold_9: 26228801-26242855 Theobroma cacao
Thecc1EG040033 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 26228801-26238800 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123828575 5264 Brassicales-Malvales View MSA
124336609 5266 SBM View MSA
124240236 5268 Malvidae View MSA
124064980 5270 Rosid View MSA
123746425 5271 Pentapetalae View MSA
122797838 5272 Eudicot View MSA
122045189 5273 Angiosperm View MSA
123429167 5275 Viridiplantae View MSA
121347962 5274 Embryophyte View MSA

0 Rna Seq Expressions

0 Strain