Gene : Sobic.008G116600 S. bicolor v3.1.1
Defline:  (1 of 1) PTHR31209//PTHR31209:SF0 - FAMILY NOT NAMED // COFACTOR-INDEPENDENT PHOSPHOGLYCERATE MUTASE Genomic Order:  1231
Name:  ? Sobic.008G116600 Secondary Identifier:  ? PAC:37928737
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4 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sbicolor GLUCONEO-PWY Sorghum bicolor pathologic  
Sbicolor PWY-1042 Sorghum bicolor pathologic  
Sbicolor PWY-5464 Sorghum bicolor pathologic  
Sbicolor PWY-5723 Sorghum bicolor pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.008G116600 0.5kb upstream 0.5kb upstream 3371   true Chr08: 52652294-52655664 Sorghum bicolor
Sobic.008G116600 0.5kb upstream 0.5kb upstream 500   false Chr08: 52655165-52655664 Sorghum bicolor
Sobic.008G116600 0.5kb downstream 0.5kb downstream 3371   true Chr08: 52651794-52655164 Sorghum bicolor
Sobic.008G116600 0.5kb downstream 0.5kb downstream 500   false Chr08: 52651794-52652293 Sorghum bicolor
Sobic.008G116600 1.0kb upstream 1.0kb upstream 3871   true Chr08: 52652294-52656164 Sorghum bicolor
Sobic.008G116600 1.0kb upstream 1.0kb upstream 1000   false Chr08: 52655165-52656164 Sorghum bicolor
Sobic.008G116600 1.0kb downstream 1.0kb downstream 3871   true Chr08: 52651294-52655164 Sorghum bicolor
Sobic.008G116600 1.0kb downstream 1.0kb downstream 1000   false Chr08: 52651294-52652293 Sorghum bicolor
Sobic.008G116600 2.0kb upstream 2.0kb upstream 4871   true Chr08: 52652294-52657164 Sorghum bicolor
Sobic.008G116600 2.0kb upstream 2.0kb upstream 2000   false Chr08: 52655165-52657164 Sorghum bicolor
Sobic.008G116600 2.0kb downstream 2.0kb downstream 4871   true Chr08: 52650294-52655164 Sorghum bicolor
Sobic.008G116600 2.0kb downstream 2.0kb downstream 2000   false Chr08: 52650294-52652293 Sorghum bicolor
Sobic.008G116600 5.0kb upstream 5.0kb upstream 7871   true Chr08: 52652294-52660164 Sorghum bicolor
Sobic.008G116600 5.0kb upstream 5.0kb upstream 5000   false Chr08: 52655165-52660164 Sorghum bicolor
Sobic.008G116600 5.0kb downstream 5.0kb downstream 7871   true Chr08: 52647294-52655164 Sorghum bicolor
Sobic.008G116600 5.0kb downstream 5.0kb downstream 5000   false Chr08: 52647294-52652293 Sorghum bicolor
Sobic.008G116600 10.0kb upstream 10.0kb upstream 12871   true Chr08: 52652294-52665164 Sorghum bicolor
Sobic.008G116600 10.0kb upstream 10.0kb upstream 10000   false Chr08: 52655165-52665164 Sorghum bicolor
Sobic.008G116600 10.0kb downstream 10.0kb downstream 12871   true Chr08: 52642294-52655164 Sorghum bicolor
Sobic.008G116600 10.0kb downstream 10.0kb downstream 10000   false Chr08: 52642294-52652293 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122175652 5267 Panicoideae View MSA
124574027 5269 Grass View MSA
122046055 5273 Angiosperm View MSA
121343817 5274 Embryophyte View MSA
123428865 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 19.147     High  
cufflinks 9.313     High Low
cufflinks 9.057       Low
cufflinks 11.765        
cufflinks 15.952     High  
cufflinks 12.457        
cufflinks 13.907     High  
cufflinks 9.572     High Low
cufflinks 16.982     High  
cufflinks 23.266     High High
cufflinks 14.941     High  
cufflinks 16.125     High  
cufflinks 22.313     High High
cufflinks 17.396     High  
cufflinks 14.554     High  
cufflinks 11.96     High  
cufflinks 13.948     High  
cufflinks 14.97     High  
cufflinks 9.678       Low
cufflinks 11.36        
cufflinks 22.573     High High
cufflinks 16.584     High  
cufflinks 20.23     High  
cufflinks 19.141     High  
cufflinks 5.419       Low
cufflinks 11.18     High  
cufflinks 11.968     High  
cufflinks 33.401     High High
cufflinks 9.178       Low
cufflinks 15.912     High  

0 Strain