Gene : Sobic.008G116000 S. bicolor v3.1.1
Defline:  (1 of 1) PTHR21089:SF1 - BIFUNCTIONAL 3-DEHYDROQUINATE DEHYDRATASE/SHIKIMATE DEHYDROGENASE, CHLOROPLASTIC Genomic Order:  1225
Name:  ? Sobic.008G116000 Secondary Identifier:  ? PAC:37927382
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sbicolor ARO-PWY Sorghum bicolor pathologic  
Sbicolor PWY-6163 Sorghum bicolor pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.008G116000 0.5kb upstream 0.5kb upstream 4099   true Chr08: 52588033-52592131 Sorghum bicolor
Sobic.008G116000 0.5kb upstream 0.5kb upstream 500   false Chr08: 52591632-52592131 Sorghum bicolor
Sobic.008G116000 0.5kb downstream 0.5kb downstream 4099   true Chr08: 52587533-52591631 Sorghum bicolor
Sobic.008G116000 0.5kb downstream 0.5kb downstream 500   false Chr08: 52587533-52588032 Sorghum bicolor
Sobic.008G116000 1.0kb upstream 1.0kb upstream 4599   true Chr08: 52588033-52592631 Sorghum bicolor
Sobic.008G116000 1.0kb upstream 1.0kb upstream 1000   false Chr08: 52591632-52592631 Sorghum bicolor
Sobic.008G116000 1.0kb downstream 1.0kb downstream 4599   true Chr08: 52587033-52591631 Sorghum bicolor
Sobic.008G116000 1.0kb downstream 1.0kb downstream 1000   false Chr08: 52587033-52588032 Sorghum bicolor
Sobic.008G116000 2.0kb upstream 2.0kb upstream 5599   true Chr08: 52588033-52593631 Sorghum bicolor
Sobic.008G116000 2.0kb upstream 2.0kb upstream 2000   false Chr08: 52591632-52593631 Sorghum bicolor
Sobic.008G116000 2.0kb downstream 2.0kb downstream 5599   true Chr08: 52586033-52591631 Sorghum bicolor
Sobic.008G116000 2.0kb downstream 2.0kb downstream 2000   false Chr08: 52586033-52588032 Sorghum bicolor
Sobic.008G116000 5.0kb upstream 5.0kb upstream 8599   true Chr08: 52588033-52596631 Sorghum bicolor
Sobic.008G116000 5.0kb upstream 5.0kb upstream 5000   false Chr08: 52591632-52596631 Sorghum bicolor
Sobic.008G116000 5.0kb downstream 5.0kb downstream 8599   true Chr08: 52583033-52591631 Sorghum bicolor
Sobic.008G116000 5.0kb downstream 5.0kb downstream 5000   false Chr08: 52583033-52588032 Sorghum bicolor
Sobic.008G116000 10.0kb upstream 10.0kb upstream 13599   true Chr08: 52588033-52601631 Sorghum bicolor
Sobic.008G116000 10.0kb upstream 10.0kb upstream 10000   false Chr08: 52591632-52601631 Sorghum bicolor
Sobic.008G116000 10.0kb downstream 10.0kb downstream 13599   true Chr08: 52578033-52591631 Sorghum bicolor
Sobic.008G116000 10.0kb downstream 10.0kb downstream 10000   false Chr08: 52578033-52588032 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122182665 5267 Panicoideae View MSA
124583290 5269 Grass View MSA
122045026 5273 Angiosperm View MSA
121345779 5274 Embryophyte View MSA
123427556 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 13.142     High  
cufflinks 8.287     High Low
cufflinks 17.097     High  
cufflinks 17.517     High  
cufflinks 21.33     High  
cufflinks 7.458       Low
cufflinks 21.278     High  
cufflinks 19.384     High  
cufflinks 16.517     High  
cufflinks 19.676     High  
cufflinks 19.866     High  
cufflinks 22.316     High  
cufflinks 24.324     High  
cufflinks 15.0     High  
cufflinks 13.488     High  
cufflinks 13.705     High  
cufflinks 22.402     High  
cufflinks 23.152     High  
cufflinks 16.546     High  
cufflinks 22.399     High  
cufflinks 18.072     High  
cufflinks 17.229     High  
cufflinks 20.458     High  
cufflinks 18.7     High  
cufflinks 7.612       Low
cufflinks 8.641     High Low
cufflinks 20.572     High  
cufflinks 1.909       Low
cufflinks 30.501     High High
cufflinks 14.761     High  

0 Strain