Gene : Sobic.008G117100 S. bicolor v3.1.1
Defline:  (1 of 1) PTHR15657:SF1 - THYROID TRANSCRIPTION FACTOR 1-ASSOCIATED PROTEIN 26 Genomic Order:  1236
Name:  ? Sobic.008G117100 Secondary Identifier:  ? PAC:37927562
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.008G117100 0.5kb upstream 0.5kb upstream 3344   true Chr08: 52716522-52719865 Sorghum bicolor
Sobic.008G117100 0.5kb upstream 0.5kb upstream 500   false Chr08: 52719366-52719865 Sorghum bicolor
Sobic.008G117100 0.5kb downstream 0.5kb downstream 3344   true Chr08: 52716022-52719365 Sorghum bicolor
Sobic.008G117100 0.5kb downstream 0.5kb downstream 500   false Chr08: 52716022-52716521 Sorghum bicolor
Sobic.008G117100 1.0kb upstream 1.0kb upstream 3844   true Chr08: 52716522-52720365 Sorghum bicolor
Sobic.008G117100 1.0kb upstream 1.0kb upstream 1000   false Chr08: 52719366-52720365 Sorghum bicolor
Sobic.008G117100 1.0kb downstream 1.0kb downstream 3844   true Chr08: 52715522-52719365 Sorghum bicolor
Sobic.008G117100 1.0kb downstream 1.0kb downstream 1000   false Chr08: 52715522-52716521 Sorghum bicolor
Sobic.008G117100 2.0kb upstream 2.0kb upstream 4844   true Chr08: 52716522-52721365 Sorghum bicolor
Sobic.008G117100 2.0kb upstream 2.0kb upstream 2000   false Chr08: 52719366-52721365 Sorghum bicolor
Sobic.008G117100 2.0kb downstream 2.0kb downstream 4844   true Chr08: 52714522-52719365 Sorghum bicolor
Sobic.008G117100 2.0kb downstream 2.0kb downstream 2000   false Chr08: 52714522-52716521 Sorghum bicolor
Sobic.008G117100 5.0kb upstream 5.0kb upstream 7844   true Chr08: 52716522-52724365 Sorghum bicolor
Sobic.008G117100 5.0kb upstream 5.0kb upstream 5000   false Chr08: 52719366-52724365 Sorghum bicolor
Sobic.008G117100 5.0kb downstream 5.0kb downstream 7844   true Chr08: 52711522-52719365 Sorghum bicolor
Sobic.008G117100 5.0kb downstream 5.0kb downstream 5000   false Chr08: 52711522-52716521 Sorghum bicolor
Sobic.008G117100 10.0kb upstream 10.0kb upstream 12844   true Chr08: 52716522-52729365 Sorghum bicolor
Sobic.008G117100 10.0kb upstream 10.0kb upstream 10000   false Chr08: 52719366-52729365 Sorghum bicolor
Sobic.008G117100 10.0kb downstream 10.0kb downstream 12844   true Chr08: 52706522-52719365 Sorghum bicolor
Sobic.008G117100 10.0kb downstream 10.0kb downstream 10000   false Chr08: 52706522-52716521 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122190341 5267 Panicoideae View MSA
124583736 5269 Grass View MSA
122042448 5273 Angiosperm View MSA
121343985 5274 Embryophyte View MSA
123426667 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 13.891     High High
cufflinks 1.722       Low
cufflinks 3.198        
cufflinks 5.577        
cufflinks 4.791        
cufflinks 5.922        
cufflinks 3.9        
cufflinks 1.633       Low
cufflinks 4.093        
cufflinks 3.997        
cufflinks 3.398        
cufflinks 3.674        
cufflinks 3.578        
cufflinks 4.125        
cufflinks 4.239        
cufflinks 4.05        
cufflinks 4.113        
cufflinks 4.68        
cufflinks 3.762        
cufflinks 5.162        
cufflinks 6.451        
cufflinks 5.129        
cufflinks 4.24        
cufflinks 4.117        
cufflinks 2.01       Low
cufflinks 1.064       Low
cufflinks 3.689        
cufflinks 13.777     High High
cufflinks 3.936        
cufflinks 5.431        

0 Strain