Gene : Sobic.008G180800 S. bicolor v3.1.1
Defline:  (1 of 3) 2.5.1.32 - 15-cis-phytoene synthase / PSase Genomic Order:  1894
Name:  ? Sobic.008G180800 Secondary Identifier:  ? PAC:37926466
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sbicolor CAROTENOID-PWY Sorghum bicolor pathologic  
Sbicolor PWY-6475 Sorghum bicolor pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.008G180800 0.5kb upstream 0.5kb upstream 3470   true Chr08: 61419351-61422820 Sorghum bicolor
Sobic.008G180800 0.5kb upstream 0.5kb upstream 500   false Chr08: 61419351-61419850 Sorghum bicolor
Sobic.008G180800 0.5kb downstream 0.5kb downstream 3470   true Chr08: 61419851-61423320 Sorghum bicolor
Sobic.008G180800 0.5kb downstream 0.5kb downstream 500   false Chr08: 61422821-61423320 Sorghum bicolor
Sobic.008G180800 1.0kb upstream 1.0kb upstream 3970   true Chr08: 61418851-61422820 Sorghum bicolor
Sobic.008G180800 1.0kb upstream 1.0kb upstream 1000   false Chr08: 61418851-61419850 Sorghum bicolor
Sobic.008G180800 1.0kb downstream 1.0kb downstream 3970   true Chr08: 61419851-61423820 Sorghum bicolor
Sobic.008G180800 1.0kb downstream 1.0kb downstream 1000   false Chr08: 61422821-61423820 Sorghum bicolor
Sobic.008G180800 2.0kb upstream 2.0kb upstream 4970   true Chr08: 61417851-61422820 Sorghum bicolor
Sobic.008G180800 2.0kb upstream 2.0kb upstream 2000   false Chr08: 61417851-61419850 Sorghum bicolor
Sobic.008G180800 2.0kb downstream 2.0kb downstream 4970   true Chr08: 61419851-61424820 Sorghum bicolor
Sobic.008G180800 2.0kb downstream 2.0kb downstream 2000   false Chr08: 61422821-61424820 Sorghum bicolor
Sobic.008G180800 5.0kb upstream 5.0kb upstream 7970   true Chr08: 61414851-61422820 Sorghum bicolor
Sobic.008G180800 5.0kb upstream 5.0kb upstream 5000   false Chr08: 61414851-61419850 Sorghum bicolor
Sobic.008G180800 5.0kb downstream 5.0kb downstream 7970   true Chr08: 61419851-61427820 Sorghum bicolor
Sobic.008G180800 5.0kb downstream 5.0kb downstream 5000   false Chr08: 61422821-61427820 Sorghum bicolor
Sobic.008G180800 10.0kb upstream 10.0kb upstream 12970   true Chr08: 61409851-61422820 Sorghum bicolor
Sobic.008G180800 10.0kb upstream 10.0kb upstream 10000   false Chr08: 61409851-61419850 Sorghum bicolor
Sobic.008G180800 10.0kb downstream 10.0kb downstream 12970   true Chr08: 61419851-61432820 Sorghum bicolor
Sobic.008G180800 10.0kb downstream 10.0kb downstream 10000   false Chr08: 61422821-61432820 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041269 5273 Angiosperm View MSA
122177505 5267 Panicoideae View MSA
124573872 5269 Grass View MSA
121345575 5274 Embryophyte View MSA
123426823 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 8.117        
cufflinks 216.598     High High
cufflinks 94.681     High High
cufflinks 18.565     High  
cufflinks 1.659       Low
cufflinks 14.04     High  
cufflinks 176.702     High High
cufflinks 75.678     High High
cufflinks 3.593        
cufflinks 2.189       Low
cufflinks 14.604     High  
cufflinks 21.212     High  
cufflinks 3.213        
cufflinks 3.317        
cufflinks 17.26     High  
cufflinks 76.274     High High
cufflinks 130.443     High High
cufflinks 162.93     High High
cufflinks 35.422     High  
cufflinks 48.48     High  
cufflinks 2.709        
cufflinks 15.047     High  
cufflinks 17.206     High  
cufflinks 17.29     High  
cufflinks 56.598     High  
cufflinks 143.577     High High
cufflinks 23.338     High  
cufflinks 0.077       Low
cufflinks 24.962     High  
cufflinks 9.369        

0 Strain