Gene : Sobic.008G190900 S. bicolor v3.1.1
Defline:  (1 of 3) 3.1.2.28 - 1,4-dihydroxy-2-naphthoyl-CoA hydrolase Genomic Order:  2001
Name:  ? Sobic.008G190900 Secondary Identifier:  ? PAC:37927272
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sbicolor PWY-5837 Sorghum bicolor pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.008G190900 0.5kb upstream 0.5kb upstream 2454   true Chr08: 62491053-62493506 Sorghum bicolor
Sobic.008G190900 0.5kb upstream 0.5kb upstream 500   false Chr08: 62493007-62493506 Sorghum bicolor
Sobic.008G190900 0.5kb downstream 0.5kb downstream 2454   true Chr08: 62490553-62493006 Sorghum bicolor
Sobic.008G190900 0.5kb downstream 0.5kb downstream 500   false Chr08: 62490553-62491052 Sorghum bicolor
Sobic.008G190900 1.0kb upstream 1.0kb upstream 2954   true Chr08: 62491053-62494006 Sorghum bicolor
Sobic.008G190900 1.0kb upstream 1.0kb upstream 1000   false Chr08: 62493007-62494006 Sorghum bicolor
Sobic.008G190900 1.0kb downstream 1.0kb downstream 2954   true Chr08: 62490053-62493006 Sorghum bicolor
Sobic.008G190900 1.0kb downstream 1.0kb downstream 1000   false Chr08: 62490053-62491052 Sorghum bicolor
Sobic.008G190900 2.0kb upstream 2.0kb upstream 3954   true Chr08: 62491053-62495006 Sorghum bicolor
Sobic.008G190900 2.0kb upstream 2.0kb upstream 2000   false Chr08: 62493007-62495006 Sorghum bicolor
Sobic.008G190900 2.0kb downstream 2.0kb downstream 3954   true Chr08: 62489053-62493006 Sorghum bicolor
Sobic.008G190900 2.0kb downstream 2.0kb downstream 2000   false Chr08: 62489053-62491052 Sorghum bicolor
Sobic.008G190900 5.0kb upstream 5.0kb upstream 6954   true Chr08: 62491053-62498006 Sorghum bicolor
Sobic.008G190900 5.0kb upstream 5.0kb upstream 5000   false Chr08: 62493007-62498006 Sorghum bicolor
Sobic.008G190900 5.0kb downstream 5.0kb downstream 6954   true Chr08: 62486053-62493006 Sorghum bicolor
Sobic.008G190900 5.0kb downstream 5.0kb downstream 5000   false Chr08: 62486053-62491052 Sorghum bicolor
Sobic.008G190900 10.0kb upstream 10.0kb upstream 11954   true Chr08: 62491053-62503006 Sorghum bicolor
Sobic.008G190900 10.0kb upstream 10.0kb upstream 10000   false Chr08: 62493007-62503006 Sorghum bicolor
Sobic.008G190900 10.0kb downstream 10.0kb downstream 11954   true Chr08: 62481053-62493006 Sorghum bicolor
Sobic.008G190900 10.0kb downstream 10.0kb downstream 10000   false Chr08: 62481053-62491052 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122179692 5267 Panicoideae View MSA
124584994 5269 Grass View MSA
122042191 5273 Angiosperm View MSA
121348407 5274 Embryophyte View MSA
123380851 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 13.646     High High
cufflinks 0.914        
cufflinks 2.547        
cufflinks 10.025       High
cufflinks 0.86       Low
cufflinks 7.266       High
cufflinks 1.5        
cufflinks 1.517        
cufflinks 5.878       High
cufflinks 7.796       High
cufflinks 1.941        
cufflinks 3.285        
cufflinks 3.299        
cufflinks 1.372        
cufflinks 2.733        
cufflinks 1.469        
cufflinks 1.633        
cufflinks 1.469        
cufflinks 1.809        
cufflinks 4.701       High
cufflinks 0.583       Low
cufflinks 0.956        
cufflinks 1.427        
cufflinks 1.41        
cufflinks 1.6        
cufflinks 0.938        
cufflinks 3.092        
cufflinks 4.47        
cufflinks 1.094        
cufflinks 2.851        

0 Strain