Gene : Sobic.010G193600 S. bicolor v3.1.1
Defline:  (1 of 1) PTHR10210//PTHR10210:SF52 - RIBOSE-PHOSPHATE PYROPHOSPHOKINASE // SUBFAMILY NOT NAMED Genomic Order:  2044
Name:  ? Sobic.010G193600 Secondary Identifier:  ? PAC:37910650
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sbicolor PWY0-662 Sorghum bicolor pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.010G193600 0.5kb upstream 0.5kb upstream 5120   true Chr10: 53583824-53588943 Sorghum bicolor
Sobic.010G193600 0.5kb upstream 0.5kb upstream 500   false Chr10: 53588444-53588943 Sorghum bicolor
Sobic.010G193600 0.5kb downstream 0.5kb downstream 5120   true Chr10: 53583324-53588443 Sorghum bicolor
Sobic.010G193600 0.5kb downstream 0.5kb downstream 500   false Chr10: 53583324-53583823 Sorghum bicolor
Sobic.010G193600 1.0kb upstream 1.0kb upstream 5620   true Chr10: 53583824-53589443 Sorghum bicolor
Sobic.010G193600 1.0kb upstream 1.0kb upstream 1000   false Chr10: 53588444-53589443 Sorghum bicolor
Sobic.010G193600 1.0kb downstream 1.0kb downstream 5620   true Chr10: 53582824-53588443 Sorghum bicolor
Sobic.010G193600 1.0kb downstream 1.0kb downstream 1000   false Chr10: 53582824-53583823 Sorghum bicolor
Sobic.010G193600 2.0kb upstream 2.0kb upstream 6620   true Chr10: 53583824-53590443 Sorghum bicolor
Sobic.010G193600 2.0kb upstream 2.0kb upstream 2000   false Chr10: 53588444-53590443 Sorghum bicolor
Sobic.010G193600 2.0kb downstream 2.0kb downstream 6620   true Chr10: 53581824-53588443 Sorghum bicolor
Sobic.010G193600 2.0kb downstream 2.0kb downstream 2000   false Chr10: 53581824-53583823 Sorghum bicolor
Sobic.010G193600 5.0kb upstream 5.0kb upstream 9620   true Chr10: 53583824-53593443 Sorghum bicolor
Sobic.010G193600 5.0kb upstream 5.0kb upstream 5000   false Chr10: 53588444-53593443 Sorghum bicolor
Sobic.010G193600 5.0kb downstream 5.0kb downstream 9620   true Chr10: 53578824-53588443 Sorghum bicolor
Sobic.010G193600 5.0kb downstream 5.0kb downstream 5000   false Chr10: 53578824-53583823 Sorghum bicolor
Sobic.010G193600 10.0kb upstream 10.0kb upstream 14620   true Chr10: 53583824-53598443 Sorghum bicolor
Sobic.010G193600 10.0kb upstream 10.0kb upstream 10000   false Chr10: 53588444-53598443 Sorghum bicolor
Sobic.010G193600 10.0kb downstream 10.0kb downstream 14620   true Chr10: 53573824-53588443 Sorghum bicolor
Sobic.010G193600 10.0kb downstream 10.0kb downstream 10000   false Chr10: 53573824-53583823 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121992428 5273 Angiosperm View MSA
122181323 5267 Panicoideae View MSA
124568594 5269 Grass View MSA
121262786 5274 Embryophyte View MSA
123427852 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 10.043       High
cufflinks 2.915        
cufflinks 2.093        
cufflinks 2.026        
cufflinks 3.515        
cufflinks 1.383       Low
cufflinks 2.882        
cufflinks 3.458        
cufflinks 1.917        
cufflinks 4.859       High
cufflinks 2.713        
cufflinks 1.79       Low
cufflinks 3.392        
cufflinks 4.239        
cufflinks 2.775        
cufflinks 1.929        
cufflinks 2.598        
cufflinks 3.32        
cufflinks 2.639        
cufflinks 2.117        
cufflinks 2.633        
cufflinks 3.235        
cufflinks 2.762        
cufflinks 2.83        
cufflinks 2.38        
cufflinks 2.854        
cufflinks 2.126        
cufflinks 3.076        
cufflinks 5.661       High
cufflinks 2.534        

0 Strain