Gene : Sobic.003G006833 S. bicolor v3.1.1
Defline:  (1 of 4) 3.5.1.1 - Asparaginase / L-asparagine amidohydrolase Genomic Order:  69
Name:  ? Sobic.003G006833 Secondary Identifier:  ? PAC:37915013
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sbicolor ASPARAGINE-DEG1-PWY Sorghum bicolor pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.003G006833 0.5kb upstream 0.5kb upstream 5994 true Chr03: 603065-609058 Sorghum bicolor
Sobic.003G006833 0.5kb upstream 0.5kb upstream 500 false Chr03: 603065-603564 Sorghum bicolor
Sobic.003G006833 0.5kb downstream 0.5kb downstream 5994 true Chr03: 603565-609558 Sorghum bicolor
Sobic.003G006833 0.5kb downstream 0.5kb downstream 500 false Chr03: 609059-609558 Sorghum bicolor
Sobic.003G006833 1.0kb upstream 1.0kb upstream 6494 true Chr03: 602565-609058 Sorghum bicolor
Sobic.003G006833 1.0kb upstream 1.0kb upstream 1000 false Chr03: 602565-603564 Sorghum bicolor
Sobic.003G006833 1.0kb downstream 1.0kb downstream 6494 true Chr03: 603565-610058 Sorghum bicolor
Sobic.003G006833 1.0kb downstream 1.0kb downstream 1000 false Chr03: 609059-610058 Sorghum bicolor
Sobic.003G006833 2.0kb upstream 2.0kb upstream 7494 true Chr03: 601565-609058 Sorghum bicolor
Sobic.003G006833 2.0kb upstream 2.0kb upstream 2000 false Chr03: 601565-603564 Sorghum bicolor
Sobic.003G006833 2.0kb downstream 2.0kb downstream 7494 true Chr03: 603565-611058 Sorghum bicolor
Sobic.003G006833 2.0kb downstream 2.0kb downstream 2000 false Chr03: 609059-611058 Sorghum bicolor
Sobic.003G006833 5.0kb upstream 5.0kb upstream 10494 true Chr03: 598565-609058 Sorghum bicolor
Sobic.003G006833 5.0kb upstream 5.0kb upstream 5000 false Chr03: 598565-603564 Sorghum bicolor
Sobic.003G006833 5.0kb downstream 5.0kb downstream 10494 true Chr03: 603565-614058 Sorghum bicolor
Sobic.003G006833 5.0kb downstream 5.0kb downstream 5000 false Chr03: 609059-614058 Sorghum bicolor
Sobic.003G006833 10.0kb upstream 10.0kb upstream 15494 true Chr03: 593565-609058 Sorghum bicolor
Sobic.003G006833 10.0kb upstream 10.0kb upstream 10000 false Chr03: 593565-603564 Sorghum bicolor
Sobic.003G006833 10.0kb downstream 10.0kb downstream 15494 true Chr03: 603565-619058 Sorghum bicolor
Sobic.003G006833 10.0kb downstream 10.0kb downstream 10000 false Chr03: 609059-619058 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122196061 5267 Panicoideae View MSA
124582967 5269 Grass View MSA
122049684 5273 Angiosperm View MSA
121346215 5274 Embryophyte View MSA
123426629 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.063       Low
cufflinks 2.869        
cufflinks 4.295        
cufflinks 6.896        
cufflinks 9.645       High
cufflinks 11.542       High
cufflinks 2.022       Low
cufflinks 3.004        
cufflinks 20.093     High High
cufflinks 13.72     High High
cufflinks 2.08       Low
cufflinks 3.667        
cufflinks 7.29        
cufflinks 2.834        
cufflinks 6.643        
cufflinks 6.139        
cufflinks 1.765       Low
cufflinks 1.677       Low
cufflinks 4.226        
cufflinks 3.59        
cufflinks 10.118       High
cufflinks 2.409        
cufflinks 1.733       Low
cufflinks 1.776       Low
cufflinks 8.865     High High
cufflinks 4.937        
cufflinks 4.099        
cufflinks 11.022     High High
cufflinks 3.073        
cufflinks 5.182        

0 Strain