Gene : Sobic.003G033100 S. bicolor v3.1.1
Defline:  (1 of 1) 2.1.1.189//2.1.1.190 - 23S rRNA (uracil(747)-C(5))-methyltransferase // 23S rRNA (uracil(1939)-C(5))-methyltransferase / RNA uridine methyltransferase A Genomic Order:  345
Name:  ? Sobic.003G033100 Secondary Identifier:  ? PAC:37912685
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.003G033100 0.5kb upstream 0.5kb upstream 5274 true Chr03: 3050005-3055278 Sorghum bicolor
Sobic.003G033100 0.5kb upstream 0.5kb upstream 500 false Chr03: 3050005-3050504 Sorghum bicolor
Sobic.003G033100 0.5kb downstream 0.5kb downstream 5274 true Chr03: 3050505-3055778 Sorghum bicolor
Sobic.003G033100 0.5kb downstream 0.5kb downstream 500 false Chr03: 3055279-3055778 Sorghum bicolor
Sobic.003G033100 1.0kb upstream 1.0kb upstream 5774 true Chr03: 3049505-3055278 Sorghum bicolor
Sobic.003G033100 1.0kb upstream 1.0kb upstream 1000 false Chr03: 3049505-3050504 Sorghum bicolor
Sobic.003G033100 1.0kb downstream 1.0kb downstream 5774 true Chr03: 3050505-3056278 Sorghum bicolor
Sobic.003G033100 1.0kb downstream 1.0kb downstream 1000 false Chr03: 3055279-3056278 Sorghum bicolor
Sobic.003G033100 2.0kb upstream 2.0kb upstream 6774 true Chr03: 3048505-3055278 Sorghum bicolor
Sobic.003G033100 2.0kb upstream 2.0kb upstream 2000 false Chr03: 3048505-3050504 Sorghum bicolor
Sobic.003G033100 2.0kb downstream 2.0kb downstream 6774 true Chr03: 3050505-3057278 Sorghum bicolor
Sobic.003G033100 2.0kb downstream 2.0kb downstream 2000 false Chr03: 3055279-3057278 Sorghum bicolor
Sobic.003G033100 5.0kb upstream 5.0kb upstream 9774 true Chr03: 3045505-3055278 Sorghum bicolor
Sobic.003G033100 5.0kb upstream 5.0kb upstream 5000 false Chr03: 3045505-3050504 Sorghum bicolor
Sobic.003G033100 5.0kb downstream 5.0kb downstream 9774 true Chr03: 3050505-3060278 Sorghum bicolor
Sobic.003G033100 5.0kb downstream 5.0kb downstream 5000 false Chr03: 3055279-3060278 Sorghum bicolor
Sobic.003G033100 10.0kb upstream 10.0kb upstream 14774 true Chr03: 3040505-3055278 Sorghum bicolor
Sobic.003G033100 10.0kb upstream 10.0kb upstream 10000 false Chr03: 3040505-3050504 Sorghum bicolor
Sobic.003G033100 10.0kb downstream 10.0kb downstream 14774 true Chr03: 3050505-3065278 Sorghum bicolor
Sobic.003G033100 10.0kb downstream 10.0kb downstream 10000 false Chr03: 3055279-3065278 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122184855 5267 Panicoideae View MSA
124574182 5269 Grass View MSA
122042152 5273 Angiosperm View MSA
121345091 5274 Embryophyte View MSA
123424748 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.161        
cufflinks 0.597       Low
cufflinks 1.753        
cufflinks 2.686        
cufflinks 3.417        
cufflinks 4.951       High
cufflinks 3.764        
cufflinks 2.05        
cufflinks 4.252        
cufflinks 4.567        
cufflinks 1.99        
cufflinks 2.309        
cufflinks 2.558        
cufflinks 2.332        
cufflinks 3.044        
cufflinks 1.035       Low
cufflinks 3.729        
cufflinks 4.98       High
cufflinks 1.183       Low
cufflinks 3.256        
cufflinks 6.941       High
cufflinks 2.698        
cufflinks 2.898        
cufflinks 2.779        
cufflinks 1.092       Low
cufflinks 0.526       Low
cufflinks 1.717        
cufflinks 2.36        
cufflinks 8.875       High
cufflinks 3.961        

0 Strain