Gene : Sobic.003G094200 S. bicolor v3.1.1
Defline:  (1 of 1) PTHR11777:SF7 - THREONYL AND ALANYL TRNA SYNTHETASE SECOND ADDITIONAL DOMAIN-CONTAINING PROTEIN Genomic Order:  992
Name:  ? Sobic.003G094200 Secondary Identifier:  ? PAC:37915938
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sbicolor TRNA-CHARGING-PWY Sorghum bicolor pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.003G094200 0.5kb upstream 0.5kb upstream 3878 true Chr03: 8192898-8196775 Sorghum bicolor
Sobic.003G094200 0.5kb upstream 0.5kb upstream 500 false Chr03: 8192898-8193397 Sorghum bicolor
Sobic.003G094200 0.5kb downstream 0.5kb downstream 3878 true Chr03: 8193398-8197275 Sorghum bicolor
Sobic.003G094200 0.5kb downstream 0.5kb downstream 500 false Chr03: 8196776-8197275 Sorghum bicolor
Sobic.003G094200 1.0kb upstream 1.0kb upstream 4378 true Chr03: 8192398-8196775 Sorghum bicolor
Sobic.003G094200 1.0kb upstream 1.0kb upstream 1000 false Chr03: 8192398-8193397 Sorghum bicolor
Sobic.003G094200 1.0kb downstream 1.0kb downstream 4378 true Chr03: 8193398-8197775 Sorghum bicolor
Sobic.003G094200 1.0kb downstream 1.0kb downstream 1000 false Chr03: 8196776-8197775 Sorghum bicolor
Sobic.003G094200 2.0kb upstream 2.0kb upstream 5378 true Chr03: 8191398-8196775 Sorghum bicolor
Sobic.003G094200 2.0kb upstream 2.0kb upstream 2000 false Chr03: 8191398-8193397 Sorghum bicolor
Sobic.003G094200 2.0kb downstream 2.0kb downstream 5378 true Chr03: 8193398-8198775 Sorghum bicolor
Sobic.003G094200 2.0kb downstream 2.0kb downstream 2000 false Chr03: 8196776-8198775 Sorghum bicolor
Sobic.003G094200 5.0kb upstream 5.0kb upstream 8378 true Chr03: 8188398-8196775 Sorghum bicolor
Sobic.003G094200 5.0kb upstream 5.0kb upstream 5000 false Chr03: 8188398-8193397 Sorghum bicolor
Sobic.003G094200 5.0kb downstream 5.0kb downstream 8378 true Chr03: 8193398-8201775 Sorghum bicolor
Sobic.003G094200 5.0kb downstream 5.0kb downstream 5000 false Chr03: 8196776-8201775 Sorghum bicolor
Sobic.003G094200 10.0kb upstream 10.0kb upstream 13378 true Chr03: 8183398-8196775 Sorghum bicolor
Sobic.003G094200 10.0kb upstream 10.0kb upstream 10000 false Chr03: 8183398-8193397 Sorghum bicolor
Sobic.003G094200 10.0kb downstream 10.0kb downstream 13378 true Chr03: 8193398-8206775 Sorghum bicolor
Sobic.003G094200 10.0kb downstream 10.0kb downstream 10000 false Chr03: 8196776-8206775 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041267 5273 Angiosperm View MSA
122175505 5267 Panicoideae View MSA
124575580 5269 Grass View MSA
121346902 5274 Embryophyte View MSA
123425374 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.454        
cufflinks 2.28        
cufflinks 5.713       High
cufflinks 5.957       High
cufflinks 1.19        
cufflinks 2.274        
cufflinks 1.271        
cufflinks 1.1        
cufflinks 4.419       High
cufflinks 3.71       High
cufflinks 2.754        
cufflinks 1.864        
cufflinks 2.216        
cufflinks 1.035       Low
cufflinks 2.215        
cufflinks 3.472        
cufflinks 1.211        
cufflinks 1.436        
cufflinks 1.518        
cufflinks 2.935        
cufflinks 1.102        
cufflinks 1.535        
cufflinks 1.803        
cufflinks 1.43        
cufflinks 2.371        
cufflinks 2.178        
cufflinks 6.667       High
cufflinks 9.135       High
cufflinks 0.748       Low
cufflinks 2.54        

0 Strain