Gene : Sobic.003G067100 S. bicolor v3.1.1
Defline:  (1 of 1) PTHR22594//PTHR22594:SF5 - ASPARTYL/LYSYL-TRNA SYNTHETASE // ASPARTATE--TRNA LIGASE, MITOCHONDRIAL Genomic Order:  697
Name:  ? Sobic.003G067100 Secondary Identifier:  ? PAC:37915285
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sbicolor TRNA-CHARGING-PWY Sorghum bicolor pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.003G067100 0.5kb upstream 0.5kb upstream 10433 true Chr03: 5704299-5714731 Sorghum bicolor
Sobic.003G067100 0.5kb upstream 0.5kb upstream 500 false Chr03: 5714232-5714731 Sorghum bicolor
Sobic.003G067100 0.5kb downstream 0.5kb downstream 10433 true Chr03: 5703799-5714231 Sorghum bicolor
Sobic.003G067100 0.5kb downstream 0.5kb downstream 500 false Chr03: 5703799-5704298 Sorghum bicolor
Sobic.003G067100 1.0kb upstream 1.0kb upstream 10933 true Chr03: 5704299-5715231 Sorghum bicolor
Sobic.003G067100 1.0kb upstream 1.0kb upstream 1000 false Chr03: 5714232-5715231 Sorghum bicolor
Sobic.003G067100 1.0kb downstream 1.0kb downstream 10933 true Chr03: 5703299-5714231 Sorghum bicolor
Sobic.003G067100 1.0kb downstream 1.0kb downstream 1000 false Chr03: 5703299-5704298 Sorghum bicolor
Sobic.003G067100 2.0kb upstream 2.0kb upstream 11933 true Chr03: 5704299-5716231 Sorghum bicolor
Sobic.003G067100 2.0kb upstream 2.0kb upstream 2000 false Chr03: 5714232-5716231 Sorghum bicolor
Sobic.003G067100 2.0kb downstream 2.0kb downstream 11933 true Chr03: 5702299-5714231 Sorghum bicolor
Sobic.003G067100 2.0kb downstream 2.0kb downstream 2000 false Chr03: 5702299-5704298 Sorghum bicolor
Sobic.003G067100 5.0kb upstream 5.0kb upstream 14933 true Chr03: 5704299-5719231 Sorghum bicolor
Sobic.003G067100 5.0kb upstream 5.0kb upstream 5000 false Chr03: 5714232-5719231 Sorghum bicolor
Sobic.003G067100 5.0kb downstream 5.0kb downstream 14933 true Chr03: 5699299-5714231 Sorghum bicolor
Sobic.003G067100 5.0kb downstream 5.0kb downstream 5000 false Chr03: 5699299-5704298 Sorghum bicolor
Sobic.003G067100 10.0kb upstream 10.0kb upstream 19933 true Chr03: 5704299-5724231 Sorghum bicolor
Sobic.003G067100 10.0kb upstream 10.0kb upstream 10000 false Chr03: 5714232-5724231 Sorghum bicolor
Sobic.003G067100 10.0kb downstream 10.0kb downstream 19933 true Chr03: 5694299-5714231 Sorghum bicolor
Sobic.003G067100 10.0kb downstream 10.0kb downstream 10000 false Chr03: 5694299-5704298 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122180670 5267 Panicoideae View MSA
124584596 5269 Grass View MSA
122041718 5273 Angiosperm View MSA
121346039 5274 Embryophyte View MSA
123424871 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.688       Low
cufflinks 1.436        
cufflinks 2.323       High
cufflinks 1.971        
cufflinks 1.272        
cufflinks 2.131        
cufflinks 2.509       High
cufflinks 2.181        
cufflinks 2.322       High
cufflinks 2.407       High
cufflinks 0.808       Low
cufflinks 0.987        
cufflinks 1.795        
cufflinks 0.8       Low
cufflinks 1.573        
cufflinks 2.173        
cufflinks 2.467       High
cufflinks 3.118       High
cufflinks 1.555        
cufflinks 1.997        
cufflinks 1.521        
cufflinks 0.919       Low
cufflinks 0.89       Low
cufflinks 0.88       Low
cufflinks 1.756        
cufflinks 1.307        
cufflinks 1.135        
cufflinks 1.146        
cufflinks 4.862       High
cufflinks 1.969        

0 Strain