Gene : Sobic.003G130600 S. bicolor v3.1.1
Defline:  (1 of 2) 3.6.1.31 - Phosphoribosyl-ATP diphosphatase / Phosphoribosyladenosine triphosphate pyrophosphatase Genomic Order:  1368
Name:  ? Sobic.003G130600 Secondary Identifier:  ? PAC:37916841
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sbicolor HISTSYN-PWY Sorghum bicolor pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.003G130600 0.5kb upstream 0.5kb upstream 4642 true Chr03: 12225940-12230581 Sorghum bicolor
Sobic.003G130600 0.5kb upstream 0.5kb upstream 500 false Chr03: 12230082-12230581 Sorghum bicolor
Sobic.003G130600 0.5kb downstream 0.5kb downstream 4642 true Chr03: 12225440-12230081 Sorghum bicolor
Sobic.003G130600 0.5kb downstream 0.5kb downstream 500 false Chr03: 12225440-12225939 Sorghum bicolor
Sobic.003G130600 1.0kb upstream 1.0kb upstream 5142 true Chr03: 12225940-12231081 Sorghum bicolor
Sobic.003G130600 1.0kb upstream 1.0kb upstream 1000 false Chr03: 12230082-12231081 Sorghum bicolor
Sobic.003G130600 1.0kb downstream 1.0kb downstream 5142 true Chr03: 12224940-12230081 Sorghum bicolor
Sobic.003G130600 1.0kb downstream 1.0kb downstream 1000 false Chr03: 12224940-12225939 Sorghum bicolor
Sobic.003G130600 2.0kb upstream 2.0kb upstream 6142 true Chr03: 12225940-12232081 Sorghum bicolor
Sobic.003G130600 2.0kb upstream 2.0kb upstream 2000 false Chr03: 12230082-12232081 Sorghum bicolor
Sobic.003G130600 2.0kb downstream 2.0kb downstream 6142 true Chr03: 12223940-12230081 Sorghum bicolor
Sobic.003G130600 2.0kb downstream 2.0kb downstream 2000 false Chr03: 12223940-12225939 Sorghum bicolor
Sobic.003G130600 5.0kb upstream 5.0kb upstream 9142 true Chr03: 12225940-12235081 Sorghum bicolor
Sobic.003G130600 5.0kb upstream 5.0kb upstream 5000 false Chr03: 12230082-12235081 Sorghum bicolor
Sobic.003G130600 5.0kb downstream 5.0kb downstream 9142 true Chr03: 12220940-12230081 Sorghum bicolor
Sobic.003G130600 5.0kb downstream 5.0kb downstream 5000 false Chr03: 12220940-12225939 Sorghum bicolor
Sobic.003G130600 10.0kb upstream 10.0kb upstream 14142 true Chr03: 12225940-12240081 Sorghum bicolor
Sobic.003G130600 10.0kb upstream 10.0kb upstream 10000 false Chr03: 12230082-12240081 Sorghum bicolor
Sobic.003G130600 10.0kb downstream 10.0kb downstream 14142 true Chr03: 12215940-12230081 Sorghum bicolor
Sobic.003G130600 10.0kb downstream 10.0kb downstream 10000 false Chr03: 12215940-12225939 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122192389 5267 Panicoideae View MSA
124569282 5269 Grass View MSA
122047358 5273 Angiosperm View MSA
121345826 5274 Embryophyte View MSA
123423910 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 10.578       High
cufflinks 0.641       Low
cufflinks 2.676        
cufflinks 6.065        
cufflinks 5.778        
cufflinks 3.356        
cufflinks 4.329        
cufflinks 1.648       Low
cufflinks 6.149        
cufflinks 6.014        
cufflinks 6.675        
cufflinks 6.103        
cufflinks 4.339        
cufflinks 6.922        
cufflinks 3.746        
cufflinks 2.315       Low
cufflinks 5.223        
cufflinks 5.39        
cufflinks 2.318       Low
cufflinks 6.152        
cufflinks 6.546        
cufflinks 7.915        
cufflinks 7.788        
cufflinks 7.408        
cufflinks 1.292       Low
cufflinks 0.951       Low
cufflinks 5.196        
cufflinks 4.244        
cufflinks 2.984        
cufflinks 5.482        

0 Strain