Gene : Sobic.003G212900 S. bicolor v3.1.1
Defline:  (1 of 1) PTHR15835:SF2 - NUCLEAR-INTERACTING PARTNER OF ALK Genomic Order:  2233
Name:  ? Sobic.003G212900 Secondary Identifier:  ? PAC:37918336
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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Cufflinks Score Displayer

 

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.003G212900 0.5kb upstream 0.5kb upstream 5437 true Chr03: 54733263-54738699 Sorghum bicolor
Sobic.003G212900 0.5kb upstream 0.5kb upstream 500 false Chr03: 54733263-54733762 Sorghum bicolor
Sobic.003G212900 0.5kb downstream 0.5kb downstream 5437 true Chr03: 54733763-54739199 Sorghum bicolor
Sobic.003G212900 0.5kb downstream 0.5kb downstream 500 false Chr03: 54738700-54739199 Sorghum bicolor
Sobic.003G212900 1.0kb upstream 1.0kb upstream 5937 true Chr03: 54732763-54738699 Sorghum bicolor
Sobic.003G212900 1.0kb upstream 1.0kb upstream 1000 false Chr03: 54732763-54733762 Sorghum bicolor
Sobic.003G212900 1.0kb downstream 1.0kb downstream 5937 true Chr03: 54733763-54739699 Sorghum bicolor
Sobic.003G212900 1.0kb downstream 1.0kb downstream 1000 false Chr03: 54738700-54739699 Sorghum bicolor
Sobic.003G212900 2.0kb upstream 2.0kb upstream 6937 true Chr03: 54731763-54738699 Sorghum bicolor
Sobic.003G212900 2.0kb upstream 2.0kb upstream 2000 false Chr03: 54731763-54733762 Sorghum bicolor
Sobic.003G212900 2.0kb downstream 2.0kb downstream 6937 true Chr03: 54733763-54740699 Sorghum bicolor
Sobic.003G212900 2.0kb downstream 2.0kb downstream 2000 false Chr03: 54738700-54740699 Sorghum bicolor
Sobic.003G212900 5.0kb upstream 5.0kb upstream 9937 true Chr03: 54728763-54738699 Sorghum bicolor
Sobic.003G212900 5.0kb upstream 5.0kb upstream 5000 false Chr03: 54728763-54733762 Sorghum bicolor
Sobic.003G212900 5.0kb downstream 5.0kb downstream 9937 true Chr03: 54733763-54743699 Sorghum bicolor
Sobic.003G212900 5.0kb downstream 5.0kb downstream 5000 false Chr03: 54738700-54743699 Sorghum bicolor
Sobic.003G212900 10.0kb upstream 10.0kb upstream 14937 true Chr03: 54723763-54738699 Sorghum bicolor
Sobic.003G212900 10.0kb upstream 10.0kb upstream 10000 false Chr03: 54723763-54733762 Sorghum bicolor
Sobic.003G212900 10.0kb downstream 10.0kb downstream 14937 true Chr03: 54733763-54748699 Sorghum bicolor
Sobic.003G212900 10.0kb downstream 10.0kb downstream 10000 false Chr03: 54738700-54748699 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122183946 5267 Panicoideae View MSA
124576571 5269 Grass View MSA
122048012 5273 Angiosperm View MSA
121349794 5274 Embryophyte View MSA
123428489 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 14.241     High High
cufflinks 3.07       Low
cufflinks 5.46       Low
cufflinks 7.162        
cufflinks 12.266        
cufflinks 8.736        
cufflinks 9.262        
cufflinks 4.523       Low
cufflinks 14.375     High High
cufflinks 16.052     High High
cufflinks 8.881        
cufflinks 11.16        
cufflinks 13.843     High  
cufflinks 9.786        
cufflinks 12.192     High  
cufflinks 5.83       Low
cufflinks 9.816        
cufflinks 9.961        
cufflinks 9.62        
cufflinks 11.595        
cufflinks 20.824     High High
cufflinks 9.304        
cufflinks 10.163        
cufflinks 10.228        
cufflinks 4.271       Low
cufflinks 3.415       Low
cufflinks 7.54        
cufflinks 8.649        
cufflinks 7.426        
cufflinks 13.563     High  

0 Strain