Gene : Sobic.003G173400 S. bicolor v3.1.1
Defline:  (1 of 1) PF16669 - Tetratricopeptide repeat protein 5 OB fold domain (TTC5_OB) Genomic Order:  1817
Name:  ? Sobic.003G173400 Secondary Identifier:  ? PAC:37912618
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0 Pathways

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.003G173400 0.5kb upstream 0.5kb upstream 46164 true Chr03: 38767449-38813612 Sorghum bicolor
Sobic.003G173400 0.5kb upstream 0.5kb upstream 500 false Chr03: 38813113-38813612 Sorghum bicolor
Sobic.003G173400 0.5kb downstream 0.5kb downstream 46164 true Chr03: 38766949-38813112 Sorghum bicolor
Sobic.003G173400 0.5kb downstream 0.5kb downstream 500 false Chr03: 38766949-38767448 Sorghum bicolor
Sobic.003G173400 1.0kb upstream 1.0kb upstream 46664 true Chr03: 38767449-38814112 Sorghum bicolor
Sobic.003G173400 1.0kb upstream 1.0kb upstream 1000 false Chr03: 38813113-38814112 Sorghum bicolor
Sobic.003G173400 1.0kb downstream 1.0kb downstream 46664 true Chr03: 38766449-38813112 Sorghum bicolor
Sobic.003G173400 1.0kb downstream 1.0kb downstream 1000 false Chr03: 38766449-38767448 Sorghum bicolor
Sobic.003G173400 2.0kb upstream 2.0kb upstream 47664 true Chr03: 38767449-38815112 Sorghum bicolor
Sobic.003G173400 2.0kb upstream 2.0kb upstream 2000 false Chr03: 38813113-38815112 Sorghum bicolor
Sobic.003G173400 2.0kb downstream 2.0kb downstream 47664 true Chr03: 38765449-38813112 Sorghum bicolor
Sobic.003G173400 2.0kb downstream 2.0kb downstream 2000 false Chr03: 38765449-38767448 Sorghum bicolor
Sobic.003G173400 5.0kb upstream 5.0kb upstream 50664 true Chr03: 38767449-38818112 Sorghum bicolor
Sobic.003G173400 5.0kb upstream 5.0kb upstream 5000 false Chr03: 38813113-38818112 Sorghum bicolor
Sobic.003G173400 5.0kb downstream 5.0kb downstream 50664 true Chr03: 38762449-38813112 Sorghum bicolor
Sobic.003G173400 5.0kb downstream 5.0kb downstream 5000 false Chr03: 38762449-38767448 Sorghum bicolor
Sobic.003G173400 10.0kb upstream 10.0kb upstream 55664 true Chr03: 38767449-38823112 Sorghum bicolor
Sobic.003G173400 10.0kb upstream 10.0kb upstream 10000 false Chr03: 38813113-38823112 Sorghum bicolor
Sobic.003G173400 10.0kb downstream 10.0kb downstream 55664 true Chr03: 38757449-38813112 Sorghum bicolor
Sobic.003G173400 10.0kb downstream 10.0kb downstream 10000 false Chr03: 38757449-38767448 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122190728 5267 Panicoideae View MSA
124583284 5269 Grass View MSA
122048209 5273 Angiosperm View MSA
121349212 5274 Embryophyte View MSA
123425821 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.072     Low  
cufflinks 0.023     Low Low
cufflinks 0.041     Low Low
cufflinks 0.057     Low  
cufflinks 0.192       High
cufflinks 0.117        
cufflinks 0.068     Low  
cufflinks 0.041     Low Low
cufflinks 0.092        
cufflinks 0.093        
cufflinks 0.096        
cufflinks 0.081     Low  
cufflinks 0.111        
cufflinks 0.073     Low  
cufflinks 0.093     Low  
cufflinks 0.038     Low Low
cufflinks 0.067     Low  
cufflinks 0.068     Low  
cufflinks 0.042     Low Low
cufflinks 0.08     Low  
cufflinks 0.18       High
cufflinks 0.169       High
cufflinks 0.088     Low  
cufflinks 0.084     Low  
cufflinks 0.036     Low Low
cufflinks 0.017     Low Low
cufflinks 0.088     Low  
cufflinks 0.05     Low  
cufflinks 0.098        
cufflinks 0.103        

0 Strain