Gene : Sobic.003G234900 S. bicolor v3.1.1
Defline:  (1 of 1) PTHR30544//PTHR30544:SF3 - 23S RRNA METHYLTRANSFERASE // SUBFAMILY NOT NAMED Genomic Order:  2464
Name:  ? Sobic.003G234900 Secondary Identifier:  ? PAC:37916852
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.003G234900 0.5kb upstream 0.5kb upstream 4173 true Chr03: 57342764-57346936 Sorghum bicolor
Sobic.003G234900 0.5kb upstream 0.5kb upstream 500 false Chr03: 57346437-57346936 Sorghum bicolor
Sobic.003G234900 0.5kb downstream 0.5kb downstream 4173 true Chr03: 57342264-57346436 Sorghum bicolor
Sobic.003G234900 0.5kb downstream 0.5kb downstream 500 false Chr03: 57342264-57342763 Sorghum bicolor
Sobic.003G234900 1.0kb upstream 1.0kb upstream 4673 true Chr03: 57342764-57347436 Sorghum bicolor
Sobic.003G234900 1.0kb upstream 1.0kb upstream 1000 false Chr03: 57346437-57347436 Sorghum bicolor
Sobic.003G234900 1.0kb downstream 1.0kb downstream 4673 true Chr03: 57341764-57346436 Sorghum bicolor
Sobic.003G234900 1.0kb downstream 1.0kb downstream 1000 false Chr03: 57341764-57342763 Sorghum bicolor
Sobic.003G234900 2.0kb upstream 2.0kb upstream 5673 true Chr03: 57342764-57348436 Sorghum bicolor
Sobic.003G234900 2.0kb upstream 2.0kb upstream 2000 false Chr03: 57346437-57348436 Sorghum bicolor
Sobic.003G234900 2.0kb downstream 2.0kb downstream 5673 true Chr03: 57340764-57346436 Sorghum bicolor
Sobic.003G234900 2.0kb downstream 2.0kb downstream 2000 false Chr03: 57340764-57342763 Sorghum bicolor
Sobic.003G234900 5.0kb upstream 5.0kb upstream 8673 true Chr03: 57342764-57351436 Sorghum bicolor
Sobic.003G234900 5.0kb upstream 5.0kb upstream 5000 false Chr03: 57346437-57351436 Sorghum bicolor
Sobic.003G234900 5.0kb downstream 5.0kb downstream 8673 true Chr03: 57337764-57346436 Sorghum bicolor
Sobic.003G234900 5.0kb downstream 5.0kb downstream 5000 false Chr03: 57337764-57342763 Sorghum bicolor
Sobic.003G234900 10.0kb upstream 10.0kb upstream 13673 true Chr03: 57342764-57356436 Sorghum bicolor
Sobic.003G234900 10.0kb upstream 10.0kb upstream 10000 false Chr03: 57346437-57356436 Sorghum bicolor
Sobic.003G234900 10.0kb downstream 10.0kb downstream 13673 true Chr03: 57332764-57346436 Sorghum bicolor
Sobic.003G234900 10.0kb downstream 10.0kb downstream 10000 false Chr03: 57332764-57342763 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122189289 5267 Panicoideae View MSA
124576485 5269 Grass View MSA
122043195 5273 Angiosperm View MSA
123429187 5275 Viridiplantae View MSA
121346291 5274 Embryophyte View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.59        
cufflinks 0.548        
cufflinks 0.666        
cufflinks 0.746       High
cufflinks 0.33        
cufflinks 0.928       High
cufflinks 0.734        
cufflinks 0.62        
cufflinks 0.674        
cufflinks 0.63        
cufflinks 0.206       Low
cufflinks 0.313        
cufflinks 0.374        
cufflinks 0.275       Low
cufflinks 0.474        
cufflinks 0.737        
cufflinks 0.659        
cufflinks 0.935       High
cufflinks 0.623        
cufflinks 0.627        
cufflinks 0.826       High
cufflinks 0.308        
cufflinks 0.254       Low
cufflinks 0.278       Low
cufflinks 0.474        
cufflinks 0.482        
cufflinks 0.233       Low
cufflinks 0.866       High
cufflinks 0.966       High
cufflinks 0.504        

0 Strain