Gene : Sobic.003G294100 S. bicolor v3.1.1
Defline:  (1 of 1) K01465 - dihydroorotase (URA4, pyrC) Genomic Order:  3097
Name:  ? Sobic.003G294100 Secondary Identifier:  ? PAC:37912864
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sbicolor PWY0-162 Sorghum bicolor pathologic  
Sbicolor PWY-5686 Sorghum bicolor pathologic  
Sbicolor PWY-7211 Sorghum bicolor pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.003G294100 0.5kb upstream 0.5kb upstream 4486 true Chr03: 62650008-62654493 Sorghum bicolor
Sobic.003G294100 0.5kb upstream 0.5kb upstream 500 false Chr03: 62650008-62650507 Sorghum bicolor
Sobic.003G294100 0.5kb downstream 0.5kb downstream 4486 true Chr03: 62650508-62654993 Sorghum bicolor
Sobic.003G294100 0.5kb downstream 0.5kb downstream 500 false Chr03: 62654494-62654993 Sorghum bicolor
Sobic.003G294100 1.0kb upstream 1.0kb upstream 4986 true Chr03: 62649508-62654493 Sorghum bicolor
Sobic.003G294100 1.0kb upstream 1.0kb upstream 1000 false Chr03: 62649508-62650507 Sorghum bicolor
Sobic.003G294100 1.0kb downstream 1.0kb downstream 4986 true Chr03: 62650508-62655493 Sorghum bicolor
Sobic.003G294100 1.0kb downstream 1.0kb downstream 1000 false Chr03: 62654494-62655493 Sorghum bicolor
Sobic.003G294100 2.0kb upstream 2.0kb upstream 5986 true Chr03: 62648508-62654493 Sorghum bicolor
Sobic.003G294100 2.0kb upstream 2.0kb upstream 2000 false Chr03: 62648508-62650507 Sorghum bicolor
Sobic.003G294100 2.0kb downstream 2.0kb downstream 5986 true Chr03: 62650508-62656493 Sorghum bicolor
Sobic.003G294100 2.0kb downstream 2.0kb downstream 2000 false Chr03: 62654494-62656493 Sorghum bicolor
Sobic.003G294100 5.0kb upstream 5.0kb upstream 8986 true Chr03: 62645508-62654493 Sorghum bicolor
Sobic.003G294100 5.0kb upstream 5.0kb upstream 5000 false Chr03: 62645508-62650507 Sorghum bicolor
Sobic.003G294100 5.0kb downstream 5.0kb downstream 8986 true Chr03: 62650508-62659493 Sorghum bicolor
Sobic.003G294100 5.0kb downstream 5.0kb downstream 5000 false Chr03: 62654494-62659493 Sorghum bicolor
Sobic.003G294100 10.0kb upstream 10.0kb upstream 13986 true Chr03: 62640508-62654493 Sorghum bicolor
Sobic.003G294100 10.0kb upstream 10.0kb upstream 10000 false Chr03: 62640508-62650507 Sorghum bicolor
Sobic.003G294100 10.0kb downstream 10.0kb downstream 13986 true Chr03: 62650508-62664493 Sorghum bicolor
Sobic.003G294100 10.0kb downstream 10.0kb downstream 10000 false Chr03: 62654494-62664493 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041185 5273 Angiosperm View MSA
122192590 5267 Panicoideae View MSA
124590049 5269 Grass View MSA
121347415 5274 Embryophyte View MSA
123424223 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.22        
cufflinks 0.621       Low
cufflinks 0.738       Low
cufflinks 0.908       Low
cufflinks 5.032        
cufflinks 1.697        
cufflinks 2.778        
cufflinks 1.68        
cufflinks 2.761        
cufflinks 2.829        
cufflinks 5.987        
cufflinks 6.033        
cufflinks 2.183        
cufflinks 6.25        
cufflinks 3.057        
cufflinks 1.092       Low
cufflinks 2.993        
cufflinks 3.093        
cufflinks 1.383        
cufflinks 2.979        
cufflinks 4.695        
cufflinks 7.549       High
cufflinks 7.088       High
cufflinks 7.305       High
cufflinks 0.398       Low
cufflinks 0.739       Low
cufflinks 5.926        
cufflinks 2.068        
cufflinks 2.937        
cufflinks 4.804        

0 Strain