Gene : Sobic.003G309300 S. bicolor v3.1.1
Defline:  (1 of 1) PTHR10949//PTHR10949:SF12 - LIPOYL SYNTHASE // LIPOYL SYNTHASE, CHLOROPLASTIC Genomic Order:  3256
Name:  ? Sobic.003G309300 Secondary Identifier:  ? PAC:37914461
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sbicolor PWY0-501 Sorghum bicolor pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.003G309300 0.5kb upstream 0.5kb upstream 5218 true Chr03: 63772697-63777914 Sorghum bicolor
Sobic.003G309300 0.5kb upstream 0.5kb upstream 500 false Chr03: 63772697-63773196 Sorghum bicolor
Sobic.003G309300 0.5kb downstream 0.5kb downstream 5218 true Chr03: 63773197-63778414 Sorghum bicolor
Sobic.003G309300 0.5kb downstream 0.5kb downstream 500 false Chr03: 63777915-63778414 Sorghum bicolor
Sobic.003G309300 1.0kb upstream 1.0kb upstream 5718 true Chr03: 63772197-63777914 Sorghum bicolor
Sobic.003G309300 1.0kb upstream 1.0kb upstream 1000 false Chr03: 63772197-63773196 Sorghum bicolor
Sobic.003G309300 1.0kb downstream 1.0kb downstream 5718 true Chr03: 63773197-63778914 Sorghum bicolor
Sobic.003G309300 1.0kb downstream 1.0kb downstream 1000 false Chr03: 63777915-63778914 Sorghum bicolor
Sobic.003G309300 2.0kb upstream 2.0kb upstream 6718 true Chr03: 63771197-63777914 Sorghum bicolor
Sobic.003G309300 2.0kb upstream 2.0kb upstream 2000 false Chr03: 63771197-63773196 Sorghum bicolor
Sobic.003G309300 2.0kb downstream 2.0kb downstream 6718 true Chr03: 63773197-63779914 Sorghum bicolor
Sobic.003G309300 2.0kb downstream 2.0kb downstream 2000 false Chr03: 63777915-63779914 Sorghum bicolor
Sobic.003G309300 5.0kb upstream 5.0kb upstream 9718 true Chr03: 63768197-63777914 Sorghum bicolor
Sobic.003G309300 5.0kb upstream 5.0kb upstream 5000 false Chr03: 63768197-63773196 Sorghum bicolor
Sobic.003G309300 5.0kb downstream 5.0kb downstream 9718 true Chr03: 63773197-63782914 Sorghum bicolor
Sobic.003G309300 5.0kb downstream 5.0kb downstream 5000 false Chr03: 63777915-63782914 Sorghum bicolor
Sobic.003G309300 10.0kb upstream 10.0kb upstream 14718 true Chr03: 63763197-63777914 Sorghum bicolor
Sobic.003G309300 10.0kb upstream 10.0kb upstream 10000 false Chr03: 63763197-63773196 Sorghum bicolor
Sobic.003G309300 10.0kb downstream 10.0kb downstream 14718 true Chr03: 63773197-63787914 Sorghum bicolor
Sobic.003G309300 10.0kb downstream 10.0kb downstream 10000 false Chr03: 63777915-63787914 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041417 5273 Angiosperm View MSA
122177752 5267 Panicoideae View MSA
124585962 5269 Grass View MSA
121346374 5274 Embryophyte View MSA
123424868 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.47        
cufflinks 5.227        
cufflinks 4.519        
cufflinks 5.251        
cufflinks 4.309        
cufflinks 4.117        
cufflinks 4.653        
cufflinks 6.212        
cufflinks 3.205       Low
cufflinks 3.261       Low
cufflinks 7.074        
cufflinks 7.06        
cufflinks 3.34       Low
cufflinks 7.501        
cufflinks 5.082        
cufflinks 2.874       Low
cufflinks 5.22        
cufflinks 5.743        
cufflinks 2.494       Low
cufflinks 4.586        
cufflinks 4.151        
cufflinks 8.744       High
cufflinks 8.782       High
cufflinks 8.32       High
cufflinks 4.595        
cufflinks 5.839        
cufflinks 8.853       High
cufflinks 11.225     High High
cufflinks 8.125       High
cufflinks 6.723        

0 Strain