Gene : Sobic.003G402000 S. bicolor v3.1.1
Defline:  (1 of 1) PTHR12506//PTHR12506:SF21 - PROTEIN PHOSPHATASE RELATED // SUBFAMILY NOT NAMED Genomic Order:  4229
Name:  ? Sobic.003G402000 Secondary Identifier:  ? PAC:37918842
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Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.003G402000 0.5kb upstream 0.5kb upstream 6985 true Chr03: 71021408-71028392 Sorghum bicolor
Sobic.003G402000 0.5kb upstream 0.5kb upstream 500 false Chr03: 71027893-71028392 Sorghum bicolor
Sobic.003G402000 0.5kb downstream 0.5kb downstream 6985 true Chr03: 71020908-71027892 Sorghum bicolor
Sobic.003G402000 0.5kb downstream 0.5kb downstream 500 false Chr03: 71020908-71021407 Sorghum bicolor
Sobic.003G402000 1.0kb upstream 1.0kb upstream 7485 true Chr03: 71021408-71028892 Sorghum bicolor
Sobic.003G402000 1.0kb upstream 1.0kb upstream 1000 false Chr03: 71027893-71028892 Sorghum bicolor
Sobic.003G402000 1.0kb downstream 1.0kb downstream 7485 true Chr03: 71020408-71027892 Sorghum bicolor
Sobic.003G402000 1.0kb downstream 1.0kb downstream 1000 false Chr03: 71020408-71021407 Sorghum bicolor
Sobic.003G402000 2.0kb upstream 2.0kb upstream 8485 true Chr03: 71021408-71029892 Sorghum bicolor
Sobic.003G402000 2.0kb upstream 2.0kb upstream 2000 false Chr03: 71027893-71029892 Sorghum bicolor
Sobic.003G402000 2.0kb downstream 2.0kb downstream 8485 true Chr03: 71019408-71027892 Sorghum bicolor
Sobic.003G402000 2.0kb downstream 2.0kb downstream 2000 false Chr03: 71019408-71021407 Sorghum bicolor
Sobic.003G402000 5.0kb upstream 5.0kb upstream 11485 true Chr03: 71021408-71032892 Sorghum bicolor
Sobic.003G402000 5.0kb upstream 5.0kb upstream 5000 false Chr03: 71027893-71032892 Sorghum bicolor
Sobic.003G402000 5.0kb downstream 5.0kb downstream 11485 true Chr03: 71016408-71027892 Sorghum bicolor
Sobic.003G402000 5.0kb downstream 5.0kb downstream 5000 false Chr03: 71016408-71021407 Sorghum bicolor
Sobic.003G402000 10.0kb upstream 10.0kb upstream 16485 true Chr03: 71021408-71037892 Sorghum bicolor
Sobic.003G402000 10.0kb upstream 10.0kb upstream 10000 false Chr03: 71027893-71037892 Sorghum bicolor
Sobic.003G402000 10.0kb downstream 10.0kb downstream 16485 true Chr03: 71011408-71027892 Sorghum bicolor
Sobic.003G402000 10.0kb downstream 10.0kb downstream 10000 false Chr03: 71011408-71021407 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122181351 5267 Panicoideae View MSA
124582306 5269 Grass View MSA
122047416 5273 Angiosperm View MSA
121348027 5274 Embryophyte View MSA
123428726 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.524       Low
cufflinks 13.41     High High
cufflinks 7.914        
cufflinks 5.506        
cufflinks 6.571        
cufflinks 8.006        
cufflinks 6.018        
cufflinks 10.896     High High
cufflinks 6.33        
cufflinks 6.823        
cufflinks 2.334       Low
cufflinks 3.628        
cufflinks 9.245       High
cufflinks 2.366       Low
cufflinks 8.916        
cufflinks 6.327        
cufflinks 5.542        
cufflinks 5.952        
cufflinks 9.826       High
cufflinks 4.754        
cufflinks 2.833        
cufflinks 1.497       Low
cufflinks 2.488       Low
cufflinks 2.278       Low
cufflinks 8.188        
cufflinks 15.564     High High
cufflinks 3.896        
cufflinks 2.94        
cufflinks 4.509        
cufflinks 8.297        

0 Strain