Gene : Sobic.001G081300 S. bicolor v3.1.1
Defline:  (1 of 437) PF13041 - PPR repeat family (PPR_2) Genomic Order:  826
Name:  ? Sobic.001G081300 Secondary Identifier:  ? PAC:37939870
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.001G081300 0.5kb upstream 0.5kb upstream 13582 true Chr01: 6277380-6290961 Sorghum bicolor
Sobic.001G081300 0.5kb upstream 0.5kb upstream 500 false Chr01: 6290462-6290961 Sorghum bicolor
Sobic.001G081300 0.5kb downstream 0.5kb downstream 13582 true Chr01: 6276880-6290461 Sorghum bicolor
Sobic.001G081300 0.5kb downstream 0.5kb downstream 500 false Chr01: 6276880-6277379 Sorghum bicolor
Sobic.001G081300 1.0kb upstream 1.0kb upstream 14082 true Chr01: 6277380-6291461 Sorghum bicolor
Sobic.001G081300 1.0kb upstream 1.0kb upstream 1000 false Chr01: 6290462-6291461 Sorghum bicolor
Sobic.001G081300 1.0kb downstream 1.0kb downstream 14082 true Chr01: 6276380-6290461 Sorghum bicolor
Sobic.001G081300 1.0kb downstream 1.0kb downstream 1000 false Chr01: 6276380-6277379 Sorghum bicolor
Sobic.001G081300 2.0kb upstream 2.0kb upstream 15082 true Chr01: 6277380-6292461 Sorghum bicolor
Sobic.001G081300 2.0kb upstream 2.0kb upstream 2000 false Chr01: 6290462-6292461 Sorghum bicolor
Sobic.001G081300 2.0kb downstream 2.0kb downstream 15082 true Chr01: 6275380-6290461 Sorghum bicolor
Sobic.001G081300 2.0kb downstream 2.0kb downstream 2000 false Chr01: 6275380-6277379 Sorghum bicolor
Sobic.001G081300 5.0kb upstream 5.0kb upstream 18082 true Chr01: 6277380-6295461 Sorghum bicolor
Sobic.001G081300 5.0kb upstream 5.0kb upstream 5000 false Chr01: 6290462-6295461 Sorghum bicolor
Sobic.001G081300 5.0kb downstream 5.0kb downstream 18082 true Chr01: 6272380-6290461 Sorghum bicolor
Sobic.001G081300 5.0kb downstream 5.0kb downstream 5000 false Chr01: 6272380-6277379 Sorghum bicolor
Sobic.001G081300 10.0kb upstream 10.0kb upstream 23082 true Chr01: 6277380-6300461 Sorghum bicolor
Sobic.001G081300 10.0kb upstream 10.0kb upstream 10000 false Chr01: 6290462-6300461 Sorghum bicolor
Sobic.001G081300 10.0kb downstream 10.0kb downstream 23082 true Chr01: 6267380-6290461 Sorghum bicolor
Sobic.001G081300 10.0kb downstream 10.0kb downstream 10000 false Chr01: 6267380-6277379 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122176098 5267 Panicoideae View MSA
124577889 5269 Grass View MSA
122045173 5273 Angiosperm View MSA
121310410 5274 Embryophyte View MSA
123347900 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.402       High
cufflinks 0.031     Low Low
cufflinks 0.12        
cufflinks 0.148        
cufflinks 0.378       High
cufflinks 0.313        
cufflinks 0.164        
cufflinks 0.068       Low
cufflinks 0.285        
cufflinks 0.344        
cufflinks 0.207        
cufflinks 0.268        
cufflinks 0.227        
cufflinks 0.206        
cufflinks 0.303        
cufflinks 0.065     Low Low
cufflinks 0.177        
cufflinks 0.17        
cufflinks 0.066     Low Low
cufflinks 0.169        
cufflinks 0.427       High
cufflinks 0.228        
cufflinks 0.218        
cufflinks 0.222        
cufflinks 0.026     Low Low
cufflinks 0.053       Low
cufflinks 0.205        
cufflinks 0.249        
cufflinks 0.126        
cufflinks 0.335        

0 Strain