Gene : Sobic.001G072000 S. bicolor v3.1.1
Defline:  (1 of 2) K00234 - succinate dehydrogenase (ubiquinone) flavoprotein subunit (SDHA, SDH1) Genomic Order:  729
Name:  ? Sobic.001G072000 Secondary Identifier:  ? PAC:37938959
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Sequence Feature Displayer

Ontology Annotation Displayer

6 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sbicolor PWY-3781 Sorghum bicolor pathologic  
Sbicolor PWY-4302 Sorghum bicolor pathologic  
Sbicolor PWY-5464 Sorghum bicolor pathologic  
Sbicolor PWY-561 Sorghum bicolor pathologic  
Sbicolor PWY-5690 Sorghum bicolor pathologic  
Sbicolor PWY-7279 Sorghum bicolor pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.001G072000 0.5kb upstream 0.5kb upstream 6420 true Chr01: 5476734-5483153 Sorghum bicolor
Sobic.001G072000 0.5kb upstream 0.5kb upstream 500 false Chr01: 5476734-5477233 Sorghum bicolor
Sobic.001G072000 0.5kb downstream 0.5kb downstream 6420 true Chr01: 5477234-5483653 Sorghum bicolor
Sobic.001G072000 0.5kb downstream 0.5kb downstream 500 false Chr01: 5483154-5483653 Sorghum bicolor
Sobic.001G072000 1.0kb upstream 1.0kb upstream 6920 true Chr01: 5476234-5483153 Sorghum bicolor
Sobic.001G072000 1.0kb upstream 1.0kb upstream 1000 false Chr01: 5476234-5477233 Sorghum bicolor
Sobic.001G072000 1.0kb downstream 1.0kb downstream 6920 true Chr01: 5477234-5484153 Sorghum bicolor
Sobic.001G072000 1.0kb downstream 1.0kb downstream 1000 false Chr01: 5483154-5484153 Sorghum bicolor
Sobic.001G072000 2.0kb upstream 2.0kb upstream 7920 true Chr01: 5475234-5483153 Sorghum bicolor
Sobic.001G072000 2.0kb upstream 2.0kb upstream 2000 false Chr01: 5475234-5477233 Sorghum bicolor
Sobic.001G072000 2.0kb downstream 2.0kb downstream 7920 true Chr01: 5477234-5485153 Sorghum bicolor
Sobic.001G072000 2.0kb downstream 2.0kb downstream 2000 false Chr01: 5483154-5485153 Sorghum bicolor
Sobic.001G072000 5.0kb upstream 5.0kb upstream 10920 true Chr01: 5472234-5483153 Sorghum bicolor
Sobic.001G072000 5.0kb upstream 5.0kb upstream 5000 false Chr01: 5472234-5477233 Sorghum bicolor
Sobic.001G072000 5.0kb downstream 5.0kb downstream 10920 true Chr01: 5477234-5488153 Sorghum bicolor
Sobic.001G072000 5.0kb downstream 5.0kb downstream 5000 false Chr01: 5483154-5488153 Sorghum bicolor
Sobic.001G072000 10.0kb upstream 10.0kb upstream 15920 true Chr01: 5467234-5483153 Sorghum bicolor
Sobic.001G072000 10.0kb upstream 10.0kb upstream 10000 false Chr01: 5467234-5477233 Sorghum bicolor
Sobic.001G072000 10.0kb downstream 10.0kb downstream 15920 true Chr01: 5477234-5493153 Sorghum bicolor
Sobic.001G072000 10.0kb downstream 10.0kb downstream 10000 false Chr01: 5483154-5493153 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122190568 5267 Panicoideae View MSA
124571712 5269 Grass View MSA
122043363 5273 Angiosperm View MSA
121346345 5274 Embryophyte View MSA
123424943 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.253        
cufflinks 0.158       Low
cufflinks 0.237       Low
cufflinks 0.195       Low
cufflinks 20.289     High High
cufflinks 0.868        
cufflinks 3.485        
cufflinks 0.405       Low
cufflinks 2.259        
cufflinks 2.241        
cufflinks 5.898        
cufflinks 3.331        
cufflinks 3.085        
cufflinks 7.354        
cufflinks 6.129        
cufflinks 0.171       Low
cufflinks 3.233        
cufflinks 3.627        
cufflinks 0.474        
cufflinks 1.517        
cufflinks 13.639       High
cufflinks 14.843     High High
cufflinks 8.846        
cufflinks 10.538        
cufflinks 0.055       Low
cufflinks 0.081       Low
cufflinks 2.259        
cufflinks 0.201       Low
cufflinks 1.425        
cufflinks 7.424        

0 Strain