Gene : Sobic.003G362000 S. bicolor v3.1.1
Defline:  (1 of 1) 2.4.99.12 - Lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase / Lipid IV(A) KDO transferase Genomic Order:  3804
Name:  ? Sobic.003G362000 Secondary Identifier:  ? PAC:37917382
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sbicolor KDOSYN-PWY Sorghum bicolor pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.003G362000 0.5kb upstream 0.5kb upstream 5383 true Chr03: 67953763-67959145 Sorghum bicolor
Sobic.003G362000 0.5kb upstream 0.5kb upstream 500 false Chr03: 67958646-67959145 Sorghum bicolor
Sobic.003G362000 0.5kb downstream 0.5kb downstream 5383 true Chr03: 67953263-67958645 Sorghum bicolor
Sobic.003G362000 0.5kb downstream 0.5kb downstream 500 false Chr03: 67953263-67953762 Sorghum bicolor
Sobic.003G362000 1.0kb upstream 1.0kb upstream 5883 true Chr03: 67953763-67959645 Sorghum bicolor
Sobic.003G362000 1.0kb upstream 1.0kb upstream 1000 false Chr03: 67958646-67959645 Sorghum bicolor
Sobic.003G362000 1.0kb downstream 1.0kb downstream 5883 true Chr03: 67952763-67958645 Sorghum bicolor
Sobic.003G362000 1.0kb downstream 1.0kb downstream 1000 false Chr03: 67952763-67953762 Sorghum bicolor
Sobic.003G362000 2.0kb upstream 2.0kb upstream 6883 true Chr03: 67953763-67960645 Sorghum bicolor
Sobic.003G362000 2.0kb upstream 2.0kb upstream 2000 false Chr03: 67958646-67960645 Sorghum bicolor
Sobic.003G362000 2.0kb downstream 2.0kb downstream 6883 true Chr03: 67951763-67958645 Sorghum bicolor
Sobic.003G362000 2.0kb downstream 2.0kb downstream 2000 false Chr03: 67951763-67953762 Sorghum bicolor
Sobic.003G362000 5.0kb upstream 5.0kb upstream 9883 true Chr03: 67953763-67963645 Sorghum bicolor
Sobic.003G362000 5.0kb upstream 5.0kb upstream 5000 false Chr03: 67958646-67963645 Sorghum bicolor
Sobic.003G362000 5.0kb downstream 5.0kb downstream 9883 true Chr03: 67948763-67958645 Sorghum bicolor
Sobic.003G362000 5.0kb downstream 5.0kb downstream 5000 false Chr03: 67948763-67953762 Sorghum bicolor
Sobic.003G362000 10.0kb upstream 10.0kb upstream 14883 true Chr03: 67953763-67968645 Sorghum bicolor
Sobic.003G362000 10.0kb upstream 10.0kb upstream 10000 false Chr03: 67958646-67968645 Sorghum bicolor
Sobic.003G362000 10.0kb downstream 10.0kb downstream 14883 true Chr03: 67943763-67958645 Sorghum bicolor
Sobic.003G362000 10.0kb downstream 10.0kb downstream 10000 false Chr03: 67943763-67953762 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122185332 5267 Panicoideae View MSA
124575901 5269 Grass View MSA
122042607 5273 Angiosperm View MSA
121344444 5274 Embryophyte View MSA
123380045 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.019        
cufflinks 0.581       Low
cufflinks 1.887        
cufflinks 2.957        
cufflinks 3.275        
cufflinks 2.481        
cufflinks 0.78       Low
cufflinks 0.552       Low
cufflinks 4.991       High
cufflinks 4.687       High
cufflinks 1.882        
cufflinks 2.226        
cufflinks 3.842       High
cufflinks 2.272        
cufflinks 2.631        
cufflinks 1.267        
cufflinks 0.769       Low
cufflinks 0.845       Low
cufflinks 1.819        
cufflinks 1.217        
cufflinks 6.003       High
cufflinks 2.269        
cufflinks 1.62        
cufflinks 1.743        
cufflinks 1.277        
cufflinks 0.484       Low
cufflinks 3.838       High
cufflinks 1.838        
cufflinks 0.818       Low
cufflinks 2.631        

0 Strain