Gene : Sobic.001G058700 S. bicolor v3.1.1
Defline:  (1 of 5) K12619 - 5'-3' exoribonuclease 2 (XRN2, RAT1) Genomic Order:  589
Name:  ? Sobic.001G058700 Secondary Identifier:  ? PAC:37939033
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.001G058700 0.5kb upstream 0.5kb upstream 11095 true Chr01: 4421280-4432374 Sorghum bicolor
Sobic.001G058700 0.5kb upstream 0.5kb upstream 500 false Chr01: 4431875-4432374 Sorghum bicolor
Sobic.001G058700 0.5kb downstream 0.5kb downstream 11095 true Chr01: 4420780-4431874 Sorghum bicolor
Sobic.001G058700 0.5kb downstream 0.5kb downstream 500 false Chr01: 4420780-4421279 Sorghum bicolor
Sobic.001G058700 1.0kb upstream 1.0kb upstream 11595 true Chr01: 4421280-4432874 Sorghum bicolor
Sobic.001G058700 1.0kb upstream 1.0kb upstream 1000 false Chr01: 4431875-4432874 Sorghum bicolor
Sobic.001G058700 1.0kb downstream 1.0kb downstream 11595 true Chr01: 4420280-4431874 Sorghum bicolor
Sobic.001G058700 1.0kb downstream 1.0kb downstream 1000 false Chr01: 4420280-4421279 Sorghum bicolor
Sobic.001G058700 2.0kb upstream 2.0kb upstream 12595 true Chr01: 4421280-4433874 Sorghum bicolor
Sobic.001G058700 2.0kb upstream 2.0kb upstream 2000 false Chr01: 4431875-4433874 Sorghum bicolor
Sobic.001G058700 2.0kb downstream 2.0kb downstream 12595 true Chr01: 4419280-4431874 Sorghum bicolor
Sobic.001G058700 2.0kb downstream 2.0kb downstream 2000 false Chr01: 4419280-4421279 Sorghum bicolor
Sobic.001G058700 5.0kb upstream 5.0kb upstream 15595 true Chr01: 4421280-4436874 Sorghum bicolor
Sobic.001G058700 5.0kb upstream 5.0kb upstream 5000 false Chr01: 4431875-4436874 Sorghum bicolor
Sobic.001G058700 5.0kb downstream 5.0kb downstream 15595 true Chr01: 4416280-4431874 Sorghum bicolor
Sobic.001G058700 5.0kb downstream 5.0kb downstream 5000 false Chr01: 4416280-4421279 Sorghum bicolor
Sobic.001G058700 10.0kb upstream 10.0kb upstream 20595 true Chr01: 4421280-4441874 Sorghum bicolor
Sobic.001G058700 10.0kb upstream 10.0kb upstream 10000 false Chr01: 4431875-4441874 Sorghum bicolor
Sobic.001G058700 10.0kb downstream 10.0kb downstream 20595 true Chr01: 4411280-4431874 Sorghum bicolor
Sobic.001G058700 10.0kb downstream 10.0kb downstream 10000 false Chr01: 4411280-4421279 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122183240 5267 Panicoideae View MSA
124582971 5269 Grass View MSA
122042624 5273 Angiosperm View MSA
123429022 5275 Viridiplantae View MSA
121350547 5274 Embryophyte View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.675       Low
cufflinks 3.902       Low
cufflinks 6.934       Low
cufflinks 8.858        
cufflinks 10.699        
cufflinks 10.895        
cufflinks 8.555        
cufflinks 5.652       Low
cufflinks 15.123     High High
cufflinks 16.285     High High
cufflinks 14.903     High  
cufflinks 16.821     High High
cufflinks 12.985     High  
cufflinks 16.68     High High
cufflinks 13.426     High  
cufflinks 6.614       Low
cufflinks 8.923        
cufflinks 9.118        
cufflinks 10.135        
cufflinks 10.267        
cufflinks 14.215     High  
cufflinks 13.643     High  
cufflinks 15.678     High High
cufflinks 15.351     High High
cufflinks 7.142        
cufflinks 4.507       Low
cufflinks 13.887     High  
cufflinks 7.371        
cufflinks 7.375        
cufflinks 13.686     High  

0 Strain