Gene : Sobic.001G148101 S. bicolor v3.1.1
Defline:  (1 of 4) PTHR10126 - TATA-BOX BINDING PROTEIN Genomic Order:  1537
Name:  ? Sobic.001G148101 Secondary Identifier:  ? PAC:37942551
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.001G148101 0.5kb upstream 0.5kb upstream 2825 true Chr01: 11932099-11934923 Sorghum bicolor
Sobic.001G148101 0.5kb upstream 0.5kb upstream 500 false Chr01: 11934424-11934923 Sorghum bicolor
Sobic.001G148101 0.5kb downstream 0.5kb downstream 2825 true Chr01: 11931599-11934423 Sorghum bicolor
Sobic.001G148101 0.5kb downstream 0.5kb downstream 500 false Chr01: 11931599-11932098 Sorghum bicolor
Sobic.001G148101 1.0kb upstream 1.0kb upstream 3325 true Chr01: 11932099-11935423 Sorghum bicolor
Sobic.001G148101 1.0kb upstream 1.0kb upstream 1000 false Chr01: 11934424-11935423 Sorghum bicolor
Sobic.001G148101 1.0kb downstream 1.0kb downstream 3325 true Chr01: 11931099-11934423 Sorghum bicolor
Sobic.001G148101 1.0kb downstream 1.0kb downstream 1000 false Chr01: 11931099-11932098 Sorghum bicolor
Sobic.001G148101 2.0kb upstream 2.0kb upstream 4325 true Chr01: 11932099-11936423 Sorghum bicolor
Sobic.001G148101 2.0kb upstream 2.0kb upstream 2000 false Chr01: 11934424-11936423 Sorghum bicolor
Sobic.001G148101 2.0kb downstream 2.0kb downstream 4325 true Chr01: 11930099-11934423 Sorghum bicolor
Sobic.001G148101 2.0kb downstream 2.0kb downstream 2000 false Chr01: 11930099-11932098 Sorghum bicolor
Sobic.001G148101 5.0kb upstream 5.0kb upstream 7325 true Chr01: 11932099-11939423 Sorghum bicolor
Sobic.001G148101 5.0kb upstream 5.0kb upstream 5000 false Chr01: 11934424-11939423 Sorghum bicolor
Sobic.001G148101 5.0kb downstream 5.0kb downstream 7325 true Chr01: 11927099-11934423 Sorghum bicolor
Sobic.001G148101 5.0kb downstream 5.0kb downstream 5000 false Chr01: 11927099-11932098 Sorghum bicolor
Sobic.001G148101 10.0kb upstream 10.0kb upstream 12325 true Chr01: 11932099-11944423 Sorghum bicolor
Sobic.001G148101 10.0kb upstream 10.0kb upstream 10000 false Chr01: 11934424-11944423 Sorghum bicolor
Sobic.001G148101 10.0kb downstream 10.0kb downstream 12325 true Chr01: 11922099-11934423 Sorghum bicolor
Sobic.001G148101 10.0kb downstream 10.0kb downstream 10000 false Chr01: 11922099-11932098 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122199665 5267 Panicoideae View MSA
124569114 5269 Grass View MSA
122046126 5273 Angiosperm View MSA
123429185 5275 Viridiplantae View MSA
121349658 5274 Embryophyte View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.93       Low
cufflinks 15.962     High High
cufflinks 14.932     High High
cufflinks 10.308        
cufflinks 12.193        
cufflinks 19.004     High High
cufflinks 11.139        
cufflinks 10.595     High  
cufflinks 12.823     High  
cufflinks 11.784        
cufflinks 6.931       Low
cufflinks 9.134        
cufflinks 15.943     High High
cufflinks 6.178       Low
cufflinks 11.525        
cufflinks 13.429     High  
cufflinks 9.311        
cufflinks 11.825     High  
cufflinks 16.929     High High
cufflinks 11.24        
cufflinks 14.859     High High
cufflinks 6.093       Low
cufflinks 8.619        
cufflinks 7.894        
cufflinks 13.909     High  
cufflinks 12.21     High  
cufflinks 6.778       Low
cufflinks 3.408       Low
cufflinks 8.73        
cufflinks 10.949        

0 Strain