Gene : Sobic.001G116100 S. bicolor v3.1.1
Defline:  (1 of 1) 4.3.1.19 - Threonine ammonia-lyase / Threonine dehydratase Genomic Order:  1204
Name:  ? Sobic.001G116100 Secondary Identifier:  ? PAC:37937902
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Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sbicolor BRANCHED-CHAIN-AA-SYN-PWY Sorghum bicolor pathologic  
Sbicolor ILEUSYN-PWY Sorghum bicolor pathologic  
Sbicolor PWY-3001 Sorghum bicolor pathologic  

Genomics

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Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.001G116100 0.5kb upstream 0.5kb upstream 5222 true Chr01: 9048551-9053772 Sorghum bicolor
Sobic.001G116100 0.5kb upstream 0.5kb upstream 500 false Chr01: 9053273-9053772 Sorghum bicolor
Sobic.001G116100 0.5kb downstream 0.5kb downstream 5222 true Chr01: 9048051-9053272 Sorghum bicolor
Sobic.001G116100 0.5kb downstream 0.5kb downstream 500 false Chr01: 9048051-9048550 Sorghum bicolor
Sobic.001G116100 1.0kb upstream 1.0kb upstream 5722 true Chr01: 9048551-9054272 Sorghum bicolor
Sobic.001G116100 1.0kb upstream 1.0kb upstream 1000 false Chr01: 9053273-9054272 Sorghum bicolor
Sobic.001G116100 1.0kb downstream 1.0kb downstream 5722 true Chr01: 9047551-9053272 Sorghum bicolor
Sobic.001G116100 1.0kb downstream 1.0kb downstream 1000 false Chr01: 9047551-9048550 Sorghum bicolor
Sobic.001G116100 2.0kb upstream 2.0kb upstream 6722 true Chr01: 9048551-9055272 Sorghum bicolor
Sobic.001G116100 2.0kb upstream 2.0kb upstream 2000 false Chr01: 9053273-9055272 Sorghum bicolor
Sobic.001G116100 2.0kb downstream 2.0kb downstream 6722 true Chr01: 9046551-9053272 Sorghum bicolor
Sobic.001G116100 2.0kb downstream 2.0kb downstream 2000 false Chr01: 9046551-9048550 Sorghum bicolor
Sobic.001G116100 5.0kb upstream 5.0kb upstream 9722 true Chr01: 9048551-9058272 Sorghum bicolor
Sobic.001G116100 5.0kb upstream 5.0kb upstream 5000 false Chr01: 9053273-9058272 Sorghum bicolor
Sobic.001G116100 5.0kb downstream 5.0kb downstream 9722 true Chr01: 9043551-9053272 Sorghum bicolor
Sobic.001G116100 5.0kb downstream 5.0kb downstream 5000 false Chr01: 9043551-9048550 Sorghum bicolor
Sobic.001G116100 10.0kb upstream 10.0kb upstream 14722 true Chr01: 9048551-9063272 Sorghum bicolor
Sobic.001G116100 10.0kb upstream 10.0kb upstream 10000 false Chr01: 9053273-9063272 Sorghum bicolor
Sobic.001G116100 10.0kb downstream 10.0kb downstream 14722 true Chr01: 9038551-9053272 Sorghum bicolor
Sobic.001G116100 10.0kb downstream 10.0kb downstream 10000 false Chr01: 9038551-9048550 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122040897 5273 Angiosperm View MSA
122175498 5267 Panicoideae View MSA
124581536 5269 Grass View MSA
121344792 5274 Embryophyte View MSA
123427671 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 19.443     High  
cufflinks 8.572     High Low
cufflinks 10.742     High Low
cufflinks 10.082       Low
cufflinks 44.544     High High
cufflinks 12.739        
cufflinks 14.35     High  
cufflinks 12.929     High  
cufflinks 24.956     High  
cufflinks 25.261     High  
cufflinks 38.311     High High
cufflinks 23.995     High  
cufflinks 26.094     High  
cufflinks 25.09     High  
cufflinks 39.845     High High
cufflinks 8.873       Low
cufflinks 14.247     High  
cufflinks 14.526     High  
cufflinks 14.996     High  
cufflinks 11.333       Low
cufflinks 28.388     High  
cufflinks 26.112     High  
cufflinks 24.59     High  
cufflinks 23.781     High  
cufflinks 6.961       Low
cufflinks 10.47     High Low
cufflinks 26.476     High  
cufflinks 13.742     High  
cufflinks 11.098       Low
cufflinks 32.008     High  

0 Strain