Gene : Sobic.001G108500 S. bicolor v3.1.1
Defline:  (1 of 3) PTHR10174//PTHR10174:SF149 - RETINALDEHYDE BINDING PROTEIN-RELATED // SUBFAMILY NOT NAMED Genomic Order:  1122
Name:  ? Sobic.001G108500 Secondary Identifier:  ? PAC:37942061
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Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.001G108500 0.5kb upstream 0.5kb upstream 4404 true Chr01: 8412554-8416957 Sorghum bicolor
Sobic.001G108500 0.5kb upstream 0.5kb upstream 500 false Chr01: 8416458-8416957 Sorghum bicolor
Sobic.001G108500 0.5kb downstream 0.5kb downstream 4404 true Chr01: 8412054-8416457 Sorghum bicolor
Sobic.001G108500 0.5kb downstream 0.5kb downstream 500 false Chr01: 8412054-8412553 Sorghum bicolor
Sobic.001G108500 1.0kb upstream 1.0kb upstream 4904 true Chr01: 8412554-8417457 Sorghum bicolor
Sobic.001G108500 1.0kb upstream 1.0kb upstream 1000 false Chr01: 8416458-8417457 Sorghum bicolor
Sobic.001G108500 1.0kb downstream 1.0kb downstream 4904 true Chr01: 8411554-8416457 Sorghum bicolor
Sobic.001G108500 1.0kb downstream 1.0kb downstream 1000 false Chr01: 8411554-8412553 Sorghum bicolor
Sobic.001G108500 2.0kb upstream 2.0kb upstream 5904 true Chr01: 8412554-8418457 Sorghum bicolor
Sobic.001G108500 2.0kb upstream 2.0kb upstream 2000 false Chr01: 8416458-8418457 Sorghum bicolor
Sobic.001G108500 2.0kb downstream 2.0kb downstream 5904 true Chr01: 8410554-8416457 Sorghum bicolor
Sobic.001G108500 2.0kb downstream 2.0kb downstream 2000 false Chr01: 8410554-8412553 Sorghum bicolor
Sobic.001G108500 5.0kb upstream 5.0kb upstream 8904 true Chr01: 8412554-8421457 Sorghum bicolor
Sobic.001G108500 5.0kb upstream 5.0kb upstream 5000 false Chr01: 8416458-8421457 Sorghum bicolor
Sobic.001G108500 5.0kb downstream 5.0kb downstream 8904 true Chr01: 8407554-8416457 Sorghum bicolor
Sobic.001G108500 5.0kb downstream 5.0kb downstream 5000 false Chr01: 8407554-8412553 Sorghum bicolor
Sobic.001G108500 10.0kb upstream 10.0kb upstream 13904 true Chr01: 8412554-8426457 Sorghum bicolor
Sobic.001G108500 10.0kb upstream 10.0kb upstream 10000 false Chr01: 8416458-8426457 Sorghum bicolor
Sobic.001G108500 10.0kb downstream 10.0kb downstream 13904 true Chr01: 8402554-8416457 Sorghum bicolor
Sobic.001G108500 10.0kb downstream 10.0kb downstream 10000 false Chr01: 8402554-8412553 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122194297 5267 Panicoideae View MSA
124589143 5269 Grass View MSA
122046588 5273 Angiosperm View MSA
121350309 5274 Embryophyte View MSA
123427540 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.909       Low
cufflinks 3.094       Low
cufflinks 21.302     High High
cufflinks 20.665     High High
cufflinks 41.912     High High
cufflinks 10.36        
cufflinks 5.719        
cufflinks 3.036       Low
cufflinks 3.385       Low
cufflinks 7.076        
cufflinks 12.431     High  
cufflinks 11.548        
cufflinks 13.343     High  
cufflinks 7.677        
cufflinks 12.178     High  
cufflinks 8.53        
cufflinks 6.545        
cufflinks 5.933        
cufflinks 7.765        
cufflinks 7.815        
cufflinks 18.601     High  
cufflinks 9.865        
cufflinks 12.634     High  
cufflinks 12.133     High  
cufflinks 5.326        
cufflinks 2.388       Low
cufflinks 14.817     High  
cufflinks 1.547       Low
cufflinks 4.045        
cufflinks 4.476        

0 Strain