Gene : Sobic.005G022200 S. bicolor v3.1.1
Defline:  (1 of 5) K12619 - 5'-3' exoribonuclease 2 (XRN2, RAT1) Genomic Order:  216
Name:  ? Sobic.005G022200 Secondary Identifier:  ? PAC:37925866
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.005G022200 0.5kb upstream 0.5kb upstream 6749 true Chr05: 2032710-2039458 Sorghum bicolor
Sobic.005G022200 0.5kb upstream 0.5kb upstream 500 false Chr05: 2032710-2033209 Sorghum bicolor
Sobic.005G022200 0.5kb downstream 0.5kb downstream 6749 true Chr05: 2033210-2039958 Sorghum bicolor
Sobic.005G022200 0.5kb downstream 0.5kb downstream 500 false Chr05: 2039459-2039958 Sorghum bicolor
Sobic.005G022200 1.0kb upstream 1.0kb upstream 7249 true Chr05: 2032210-2039458 Sorghum bicolor
Sobic.005G022200 1.0kb upstream 1.0kb upstream 1000 false Chr05: 2032210-2033209 Sorghum bicolor
Sobic.005G022200 1.0kb downstream 1.0kb downstream 7249 true Chr05: 2033210-2040458 Sorghum bicolor
Sobic.005G022200 1.0kb downstream 1.0kb downstream 1000 false Chr05: 2039459-2040458 Sorghum bicolor
Sobic.005G022200 2.0kb upstream 2.0kb upstream 8249 true Chr05: 2031210-2039458 Sorghum bicolor
Sobic.005G022200 2.0kb upstream 2.0kb upstream 2000 false Chr05: 2031210-2033209 Sorghum bicolor
Sobic.005G022200 2.0kb downstream 2.0kb downstream 8249 true Chr05: 2033210-2041458 Sorghum bicolor
Sobic.005G022200 2.0kb downstream 2.0kb downstream 2000 false Chr05: 2039459-2041458 Sorghum bicolor
Sobic.005G022200 5.0kb upstream 5.0kb upstream 11249 true Chr05: 2028210-2039458 Sorghum bicolor
Sobic.005G022200 5.0kb upstream 5.0kb upstream 5000 false Chr05: 2028210-2033209 Sorghum bicolor
Sobic.005G022200 5.0kb downstream 5.0kb downstream 11249 true Chr05: 2033210-2044458 Sorghum bicolor
Sobic.005G022200 5.0kb downstream 5.0kb downstream 5000 false Chr05: 2039459-2044458 Sorghum bicolor
Sobic.005G022200 10.0kb upstream 10.0kb upstream 16249 true Chr05: 2023210-2039458 Sorghum bicolor
Sobic.005G022200 10.0kb upstream 10.0kb upstream 10000 false Chr05: 2023210-2033209 Sorghum bicolor
Sobic.005G022200 10.0kb downstream 10.0kb downstream 16249 true Chr05: 2033210-2049458 Sorghum bicolor
Sobic.005G022200 10.0kb downstream 10.0kb downstream 10000 false Chr05: 2039459-2049458 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122187357 5267 Panicoideae View MSA
124582043 5269 Grass View MSA
122050556 5273 Angiosperm View MSA
123429022 5275 Viridiplantae View MSA
121311990 5274 Embryophyte View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.101       Low
cufflinks 0.184       Low
cufflinks 1.285        
cufflinks 1.076        
cufflinks 1.933        
cufflinks 1.294        
cufflinks 0.607        
cufflinks 0.334       Low
cufflinks 5.202       High
cufflinks 3.643       High
cufflinks 1.878        
cufflinks 2.944        
cufflinks 2.438        
cufflinks 3.187       High
cufflinks 1.055        
cufflinks 0.396        
cufflinks 0.417        
cufflinks 0.444        
cufflinks 0.759        
cufflinks 0.673        
cufflinks 1.556        
cufflinks 1.145        
cufflinks 1.485        
cufflinks 1.545        
cufflinks 0.571        
cufflinks 0.158       Low
cufflinks 3.143       High
cufflinks 0.037     Low Low
cufflinks 0.5        
cufflinks 1.229        

0 Strain