Gene : Sobic.005G022500 S. bicolor v3.1.1
Defline:  (1 of 6) K01209 - alpha-N-arabinofuranosidase (E3.2.1.55, abfA) Genomic Order:  219
Name:  ? Sobic.005G022500 Secondary Identifier:  ? PAC:37925007
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.005G022500 0.5kb upstream 0.5kb upstream 6551 true Chr05: 2058869-2065419 Sorghum bicolor
Sobic.005G022500 0.5kb upstream 0.5kb upstream 500 false Chr05: 2058869-2059368 Sorghum bicolor
Sobic.005G022500 0.5kb downstream 0.5kb downstream 6551 true Chr05: 2059369-2065919 Sorghum bicolor
Sobic.005G022500 0.5kb downstream 0.5kb downstream 500 false Chr05: 2065420-2065919 Sorghum bicolor
Sobic.005G022500 1.0kb upstream 1.0kb upstream 7051 true Chr05: 2058369-2065419 Sorghum bicolor
Sobic.005G022500 1.0kb upstream 1.0kb upstream 1000 false Chr05: 2058369-2059368 Sorghum bicolor
Sobic.005G022500 1.0kb downstream 1.0kb downstream 7051 true Chr05: 2059369-2066419 Sorghum bicolor
Sobic.005G022500 1.0kb downstream 1.0kb downstream 1000 false Chr05: 2065420-2066419 Sorghum bicolor
Sobic.005G022500 2.0kb upstream 2.0kb upstream 8051 true Chr05: 2057369-2065419 Sorghum bicolor
Sobic.005G022500 2.0kb upstream 2.0kb upstream 2000 false Chr05: 2057369-2059368 Sorghum bicolor
Sobic.005G022500 2.0kb downstream 2.0kb downstream 8051 true Chr05: 2059369-2067419 Sorghum bicolor
Sobic.005G022500 2.0kb downstream 2.0kb downstream 2000 false Chr05: 2065420-2067419 Sorghum bicolor
Sobic.005G022500 5.0kb upstream 5.0kb upstream 11051 true Chr05: 2054369-2065419 Sorghum bicolor
Sobic.005G022500 5.0kb upstream 5.0kb upstream 5000 false Chr05: 2054369-2059368 Sorghum bicolor
Sobic.005G022500 5.0kb downstream 5.0kb downstream 11051 true Chr05: 2059369-2070419 Sorghum bicolor
Sobic.005G022500 5.0kb downstream 5.0kb downstream 5000 false Chr05: 2065420-2070419 Sorghum bicolor
Sobic.005G022500 10.0kb upstream 10.0kb upstream 16051 true Chr05: 2049369-2065419 Sorghum bicolor
Sobic.005G022500 10.0kb upstream 10.0kb upstream 10000 false Chr05: 2049369-2059368 Sorghum bicolor
Sobic.005G022500 10.0kb downstream 10.0kb downstream 16051 true Chr05: 2059369-2075419 Sorghum bicolor
Sobic.005G022500 10.0kb downstream 10.0kb downstream 10000 false Chr05: 2065420-2075419 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122192842 5267 Panicoideae View MSA
124578027 5269 Grass View MSA
122044822 5273 Angiosperm View MSA
121344375 5274 Embryophyte View MSA
123428022 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.764       Low
cufflinks 0.858       Low
cufflinks 0.941       Low
cufflinks 0.991       Low
cufflinks 5.313        
cufflinks 8.231        
cufflinks 8.046        
cufflinks 6.195        
cufflinks 4.457        
cufflinks 5.775        
cufflinks 72.844     High High
cufflinks 33.086     High High
cufflinks 18.927     High  
cufflinks 62.504     High High
cufflinks 14.24     High  
cufflinks 0.66       Low
cufflinks 8.431        
cufflinks 8.58        
cufflinks 1.019       Low
cufflinks 8.461        
cufflinks 3.06        
cufflinks 14.331     High  
cufflinks 36.041     High High
cufflinks 31.474     High High
cufflinks 0.661       Low
cufflinks 1.106       Low
cufflinks 33.581     High High
cufflinks 2.939        
cufflinks 16.942     High  
cufflinks 15.204     High  

0 Strain