Gene : Sobic.003G430100 S. bicolor v3.1.1
Defline:  (1 of 1) PTHR31956//PTHR31956:SF10 - FAMILY NOT NAMED // NON-SPECIFIC PHOSPHOLIPASE C2 Genomic Order:  4520
Name:  ? Sobic.003G430100 Secondary Identifier:  ? PAC:37914201
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sbicolor LIPASYN-PWY Sorghum bicolor pathologic  

Genomics

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Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.003G430100 0.5kb upstream 0.5kb upstream 5234 true Chr03: 73302465-73307698 Sorghum bicolor
Sobic.003G430100 0.5kb upstream 0.5kb upstream 500 false Chr03: 73307199-73307698 Sorghum bicolor
Sobic.003G430100 0.5kb downstream 0.5kb downstream 5234 true Chr03: 73301965-73307198 Sorghum bicolor
Sobic.003G430100 0.5kb downstream 0.5kb downstream 500 false Chr03: 73301965-73302464 Sorghum bicolor
Sobic.003G430100 1.0kb upstream 1.0kb upstream 5734 true Chr03: 73302465-73308198 Sorghum bicolor
Sobic.003G430100 1.0kb upstream 1.0kb upstream 1000 false Chr03: 73307199-73308198 Sorghum bicolor
Sobic.003G430100 1.0kb downstream 1.0kb downstream 5734 true Chr03: 73301465-73307198 Sorghum bicolor
Sobic.003G430100 1.0kb downstream 1.0kb downstream 1000 false Chr03: 73301465-73302464 Sorghum bicolor
Sobic.003G430100 2.0kb upstream 2.0kb upstream 6734 true Chr03: 73302465-73309198 Sorghum bicolor
Sobic.003G430100 2.0kb upstream 2.0kb upstream 2000 false Chr03: 73307199-73309198 Sorghum bicolor
Sobic.003G430100 2.0kb downstream 2.0kb downstream 6734 true Chr03: 73300465-73307198 Sorghum bicolor
Sobic.003G430100 2.0kb downstream 2.0kb downstream 2000 false Chr03: 73300465-73302464 Sorghum bicolor
Sobic.003G430100 5.0kb upstream 5.0kb upstream 9734 true Chr03: 73302465-73312198 Sorghum bicolor
Sobic.003G430100 5.0kb upstream 5.0kb upstream 5000 false Chr03: 73307199-73312198 Sorghum bicolor
Sobic.003G430100 5.0kb downstream 5.0kb downstream 9734 true Chr03: 73297465-73307198 Sorghum bicolor
Sobic.003G430100 5.0kb downstream 5.0kb downstream 5000 false Chr03: 73297465-73302464 Sorghum bicolor
Sobic.003G430100 10.0kb upstream 10.0kb upstream 14734 true Chr03: 73302465-73317198 Sorghum bicolor
Sobic.003G430100 10.0kb upstream 10.0kb upstream 10000 false Chr03: 73307199-73317198 Sorghum bicolor
Sobic.003G430100 10.0kb downstream 10.0kb downstream 14734 true Chr03: 73292465-73307198 Sorghum bicolor
Sobic.003G430100 10.0kb downstream 10.0kb downstream 10000 false Chr03: 73292465-73302464 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122188321 5267 Panicoideae View MSA
124568850 5269 Grass View MSA
122048233 5273 Angiosperm View MSA
121345811 5274 Embryophyte View MSA
123380272 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.545       High
cufflinks 0.164       Low
cufflinks 0.055     Low Low
cufflinks 0.063     Low Low
cufflinks 2.156       High
cufflinks 0.205        
cufflinks 0.464        
cufflinks 0.25        
cufflinks 0.483        
cufflinks 0.652        
cufflinks 1.662        
cufflinks 1.593        
cufflinks 0.397        
cufflinks 2.483       High
cufflinks 1.624        
cufflinks 0.11       Low
cufflinks 0.434        
cufflinks 0.309        
cufflinks 0.133       Low
cufflinks 0.325        
cufflinks 1.061        
cufflinks 0.969        
cufflinks 0.981        
cufflinks 0.939        
cufflinks 0.539        
cufflinks 0.338        
cufflinks 1.507        
cufflinks 0.442        
cufflinks 0.489        
cufflinks 3.91       High

0 Strain