Gene : Sobic.001G177000 S. bicolor v3.1.1
Defline:  (1 of 1) K08913 - light-harvesting complex II chlorophyll a/b binding protein 2 (LHCB2) Genomic Order:  1835
Name:  ? Sobic.001G177000 Secondary Identifier:  ? PAC:37943318
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Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.001G177000 0.5kb upstream 0.5kb upstream 1869 true Chr01: 14892135-14894003 Sorghum bicolor
Sobic.001G177000 0.5kb upstream 0.5kb upstream 500 false Chr01: 14893504-14894003 Sorghum bicolor
Sobic.001G177000 0.5kb downstream 0.5kb downstream 1869 true Chr01: 14891635-14893503 Sorghum bicolor
Sobic.001G177000 0.5kb downstream 0.5kb downstream 500 false Chr01: 14891635-14892134 Sorghum bicolor
Sobic.001G177000 1.0kb upstream 1.0kb upstream 2369 true Chr01: 14892135-14894503 Sorghum bicolor
Sobic.001G177000 1.0kb upstream 1.0kb upstream 1000 false Chr01: 14893504-14894503 Sorghum bicolor
Sobic.001G177000 1.0kb downstream 1.0kb downstream 2369 true Chr01: 14891135-14893503 Sorghum bicolor
Sobic.001G177000 1.0kb downstream 1.0kb downstream 1000 false Chr01: 14891135-14892134 Sorghum bicolor
Sobic.001G177000 2.0kb upstream 2.0kb upstream 3369 true Chr01: 14892135-14895503 Sorghum bicolor
Sobic.001G177000 2.0kb upstream 2.0kb upstream 2000 false Chr01: 14893504-14895503 Sorghum bicolor
Sobic.001G177000 2.0kb downstream 2.0kb downstream 3369 true Chr01: 14890135-14893503 Sorghum bicolor
Sobic.001G177000 2.0kb downstream 2.0kb downstream 2000 false Chr01: 14890135-14892134 Sorghum bicolor
Sobic.001G177000 5.0kb upstream 5.0kb upstream 6369 true Chr01: 14892135-14898503 Sorghum bicolor
Sobic.001G177000 5.0kb upstream 5.0kb upstream 5000 false Chr01: 14893504-14898503 Sorghum bicolor
Sobic.001G177000 5.0kb downstream 5.0kb downstream 6369 true Chr01: 14887135-14893503 Sorghum bicolor
Sobic.001G177000 5.0kb downstream 5.0kb downstream 5000 false Chr01: 14887135-14892134 Sorghum bicolor
Sobic.001G177000 10.0kb upstream 10.0kb upstream 11369 true Chr01: 14892135-14903503 Sorghum bicolor
Sobic.001G177000 10.0kb upstream 10.0kb upstream 10000 false Chr01: 14893504-14903503 Sorghum bicolor
Sobic.001G177000 10.0kb downstream 10.0kb downstream 11369 true Chr01: 14882135-14893503 Sorghum bicolor
Sobic.001G177000 10.0kb downstream 10.0kb downstream 10000 false Chr01: 14882135-14892134 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041019 5273 Angiosperm View MSA
122197971 5267 Panicoideae View MSA
124568548 5269 Grass View MSA
121349648 5274 Embryophyte View MSA
123426313 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 21.35     High  
cufflinks 4073.523     High High
cufflinks 140.757     High  
cufflinks 112.235     High  
cufflinks 7.725        
cufflinks 233.133     High  
cufflinks 891.203     High High
cufflinks 5028.375     High High
cufflinks 10.332        
cufflinks 5.208        
cufflinks 1.667        
cufflinks 1.439       Low
cufflinks 18.163     High  
cufflinks 1.244       Low
cufflinks 51.282     High  
cufflinks 1233.421     High High
cufflinks 1073.52     High High
cufflinks 645.605     High  
cufflinks 1437.013     High High
cufflinks 613.783     High  
cufflinks 2.118        
cufflinks 0.527       Low
cufflinks 1.16       Low
cufflinks 3.011        
cufflinks 1084.523     High High
cufflinks 4220.131     High High
cufflinks 0.504       Low
cufflinks 1.228       Low
cufflinks 1969.225     High High
cufflinks 42.996     High  

0 Strain