Gene : Sobic.003G442000 S. bicolor v3.1.1
Defline:  (1 of 1) PTHR11088//PTHR11088:SF26 - TRNA DELTA 2 -ISOPENTENYLPYROPHOSPHATE TRANSFERASE-RELATED // TRNA DIMETHYLALLYLTRANSFERASE 2 Genomic Order:  4634
Name:  ? Sobic.003G442000 Secondary Identifier:  ? PAC:37918430
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sbicolor PWY-2781 Sorghum bicolor pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.003G442000 0.5kb upstream 0.5kb upstream 3333 true Chr03: 74062487-74065819 Sorghum bicolor
Sobic.003G442000 0.5kb upstream 0.5kb upstream 500 false Chr03: 74062487-74062986 Sorghum bicolor
Sobic.003G442000 0.5kb downstream 0.5kb downstream 3333 true Chr03: 74062987-74066319 Sorghum bicolor
Sobic.003G442000 0.5kb downstream 0.5kb downstream 500 false Chr03: 74065820-74066319 Sorghum bicolor
Sobic.003G442000 1.0kb upstream 1.0kb upstream 3833 true Chr03: 74061987-74065819 Sorghum bicolor
Sobic.003G442000 1.0kb upstream 1.0kb upstream 1000 false Chr03: 74061987-74062986 Sorghum bicolor
Sobic.003G442000 1.0kb downstream 1.0kb downstream 3833 true Chr03: 74062987-74066819 Sorghum bicolor
Sobic.003G442000 1.0kb downstream 1.0kb downstream 1000 false Chr03: 74065820-74066819 Sorghum bicolor
Sobic.003G442000 2.0kb upstream 2.0kb upstream 4833 true Chr03: 74060987-74065819 Sorghum bicolor
Sobic.003G442000 2.0kb upstream 2.0kb upstream 2000 false Chr03: 74060987-74062986 Sorghum bicolor
Sobic.003G442000 2.0kb downstream 2.0kb downstream 4833 true Chr03: 74062987-74067819 Sorghum bicolor
Sobic.003G442000 2.0kb downstream 2.0kb downstream 2000 false Chr03: 74065820-74067819 Sorghum bicolor
Sobic.003G442000 5.0kb upstream 5.0kb upstream 7833 true Chr03: 74057987-74065819 Sorghum bicolor
Sobic.003G442000 5.0kb upstream 5.0kb upstream 5000 false Chr03: 74057987-74062986 Sorghum bicolor
Sobic.003G442000 5.0kb downstream 5.0kb downstream 7833 true Chr03: 74062987-74070819 Sorghum bicolor
Sobic.003G442000 5.0kb downstream 5.0kb downstream 5000 false Chr03: 74065820-74070819 Sorghum bicolor
Sobic.003G442000 10.0kb upstream 10.0kb upstream 12833 true Chr03: 74052987-74065819 Sorghum bicolor
Sobic.003G442000 10.0kb upstream 10.0kb upstream 10000 false Chr03: 74052987-74062986 Sorghum bicolor
Sobic.003G442000 10.0kb downstream 10.0kb downstream 12833 true Chr03: 74062987-74075819 Sorghum bicolor
Sobic.003G442000 10.0kb downstream 10.0kb downstream 10000 false Chr03: 74065820-74075819 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122185785 5267 Panicoideae View MSA
124578987 5269 Grass View MSA
122043118 5273 Angiosperm View MSA
121350682 5274 Embryophyte View MSA
123428607 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.806        
cufflinks 0.821       Low
cufflinks 1.029       Low
cufflinks 2.139        
cufflinks 1.924        
cufflinks 4.498       High
cufflinks 1.056       Low
cufflinks 0.659       Low
cufflinks 4.711       High
cufflinks 3.935       High
cufflinks 2.029        
cufflinks 2.646        
cufflinks 2.548        
cufflinks 1.854        
cufflinks 1.931        
cufflinks 1.117        
cufflinks 0.987       Low
cufflinks 1.242        
cufflinks 1.186        
cufflinks 1.732        
cufflinks 3.41       High
cufflinks 1.969        
cufflinks 1.645        
cufflinks 1.679        
cufflinks 1.339        
cufflinks 0.611       Low
cufflinks 2.576        
cufflinks 5.846       High
cufflinks 1.221        
cufflinks 2.309        

0 Strain