Gene : Sobic.001G340000 S. bicolor v3.1.1
Defline:  (1 of 1) PTHR23163:SF0 - E3 UBIQUITIN-PROTEIN LIGASE BRE1 Genomic Order:  3569
Name:  ? Sobic.001G340000 Secondary Identifier:  ? PAC:37945218
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sbicolor PWY-7511 Sorghum bicolor pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.001G340000 0.5kb upstream 0.5kb upstream 16200 true Chr01: 62753870-62770069 Sorghum bicolor
Sobic.001G340000 0.5kb upstream 0.5kb upstream 500 false Chr01: 62753870-62754369 Sorghum bicolor
Sobic.001G340000 0.5kb downstream 0.5kb downstream 16200 true Chr01: 62754370-62770569 Sorghum bicolor
Sobic.001G340000 0.5kb downstream 0.5kb downstream 500 false Chr01: 62770070-62770569 Sorghum bicolor
Sobic.001G340000 1.0kb upstream 1.0kb upstream 16700 true Chr01: 62753370-62770069 Sorghum bicolor
Sobic.001G340000 1.0kb upstream 1.0kb upstream 1000 false Chr01: 62753370-62754369 Sorghum bicolor
Sobic.001G340000 1.0kb downstream 1.0kb downstream 16700 true Chr01: 62754370-62771069 Sorghum bicolor
Sobic.001G340000 1.0kb downstream 1.0kb downstream 1000 false Chr01: 62770070-62771069 Sorghum bicolor
Sobic.001G340000 2.0kb upstream 2.0kb upstream 17700 true Chr01: 62752370-62770069 Sorghum bicolor
Sobic.001G340000 2.0kb upstream 2.0kb upstream 2000 false Chr01: 62752370-62754369 Sorghum bicolor
Sobic.001G340000 2.0kb downstream 2.0kb downstream 17700 true Chr01: 62754370-62772069 Sorghum bicolor
Sobic.001G340000 2.0kb downstream 2.0kb downstream 2000 false Chr01: 62770070-62772069 Sorghum bicolor
Sobic.001G340000 5.0kb upstream 5.0kb upstream 20700 true Chr01: 62749370-62770069 Sorghum bicolor
Sobic.001G340000 5.0kb upstream 5.0kb upstream 5000 false Chr01: 62749370-62754369 Sorghum bicolor
Sobic.001G340000 5.0kb downstream 5.0kb downstream 20700 true Chr01: 62754370-62775069 Sorghum bicolor
Sobic.001G340000 5.0kb downstream 5.0kb downstream 5000 false Chr01: 62770070-62775069 Sorghum bicolor
Sobic.001G340000 10.0kb upstream 10.0kb upstream 25700 true Chr01: 62744370-62770069 Sorghum bicolor
Sobic.001G340000 10.0kb upstream 10.0kb upstream 10000 false Chr01: 62744370-62754369 Sorghum bicolor
Sobic.001G340000 10.0kb downstream 10.0kb downstream 25700 true Chr01: 62754370-62780069 Sorghum bicolor
Sobic.001G340000 10.0kb downstream 10.0kb downstream 10000 false Chr01: 62770070-62780069 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122178596 5267 Panicoideae View MSA
124578331 5269 Grass View MSA
122042098 5273 Angiosperm View MSA
121349326 5274 Embryophyte View MSA
123423997 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.471       Low
cufflinks 1.205       Low
cufflinks 4.281        
cufflinks 4.502        
cufflinks 9.199       High
cufflinks 4.452        
cufflinks 4.772        
cufflinks 1.689       Low
cufflinks 6.105        
cufflinks 6.019        
cufflinks 4.327        
cufflinks 4.952        
cufflinks 4.855        
cufflinks 3.996        
cufflinks 6.672        
cufflinks 2.236       Low
cufflinks 4.584        
cufflinks 4.909        
cufflinks 2.947        
cufflinks 5.279        
cufflinks 13.734       High
cufflinks 4.794        
cufflinks 4.496        
cufflinks 4.365        
cufflinks 2.828        
cufflinks 1.183       Low
cufflinks 4.15        
cufflinks 0.742       Low
cufflinks 3.731        
cufflinks 8.131       High

0 Strain