Gene : Sobic.001G328200 S. bicolor v3.1.1
Defline:  (1 of 2) PTHR12354//PTHR12354:SF10 - INTERFERON-RELATED DEVELOPMENTAL REGULATOR // SUBFAMILY NOT NAMED Genomic Order:  3452
Name:  ? Sobic.001G328200 Secondary Identifier:  ? PAC:37938577
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.001G328200 0.5kb upstream 0.5kb upstream 5554 true Chr01: 61583587-61589140 Sorghum bicolor
Sobic.001G328200 0.5kb upstream 0.5kb upstream 500 false Chr01: 61583587-61584086 Sorghum bicolor
Sobic.001G328200 0.5kb downstream 0.5kb downstream 5554 true Chr01: 61584087-61589640 Sorghum bicolor
Sobic.001G328200 0.5kb downstream 0.5kb downstream 500 false Chr01: 61589141-61589640 Sorghum bicolor
Sobic.001G328200 1.0kb upstream 1.0kb upstream 6054 true Chr01: 61583087-61589140 Sorghum bicolor
Sobic.001G328200 1.0kb upstream 1.0kb upstream 1000 false Chr01: 61583087-61584086 Sorghum bicolor
Sobic.001G328200 1.0kb downstream 1.0kb downstream 6054 true Chr01: 61584087-61590140 Sorghum bicolor
Sobic.001G328200 1.0kb downstream 1.0kb downstream 1000 false Chr01: 61589141-61590140 Sorghum bicolor
Sobic.001G328200 2.0kb upstream 2.0kb upstream 7054 true Chr01: 61582087-61589140 Sorghum bicolor
Sobic.001G328200 2.0kb upstream 2.0kb upstream 2000 false Chr01: 61582087-61584086 Sorghum bicolor
Sobic.001G328200 2.0kb downstream 2.0kb downstream 7054 true Chr01: 61584087-61591140 Sorghum bicolor
Sobic.001G328200 2.0kb downstream 2.0kb downstream 2000 false Chr01: 61589141-61591140 Sorghum bicolor
Sobic.001G328200 5.0kb upstream 5.0kb upstream 10054 true Chr01: 61579087-61589140 Sorghum bicolor
Sobic.001G328200 5.0kb upstream 5.0kb upstream 5000 false Chr01: 61579087-61584086 Sorghum bicolor
Sobic.001G328200 5.0kb downstream 5.0kb downstream 10054 true Chr01: 61584087-61594140 Sorghum bicolor
Sobic.001G328200 5.0kb downstream 5.0kb downstream 5000 false Chr01: 61589141-61594140 Sorghum bicolor
Sobic.001G328200 10.0kb upstream 10.0kb upstream 15054 true Chr01: 61574087-61589140 Sorghum bicolor
Sobic.001G328200 10.0kb upstream 10.0kb upstream 10000 false Chr01: 61574087-61584086 Sorghum bicolor
Sobic.001G328200 10.0kb downstream 10.0kb downstream 15054 true Chr01: 61584087-61599140 Sorghum bicolor
Sobic.001G328200 10.0kb downstream 10.0kb downstream 10000 false Chr01: 61589141-61599140 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122179479 5267 Panicoideae View MSA
124571828 5269 Grass View MSA
122043831 5273 Angiosperm View MSA
121349485 5274 Embryophyte View MSA
123428444 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.922       Low
cufflinks 7.044     High  
cufflinks 13.392     High High
cufflinks 11.315       High
cufflinks 6.567        
cufflinks 11.573       High
cufflinks 5.962        
cufflinks 4.371       Low
cufflinks 9.561        
cufflinks 7.677        
cufflinks 8.132        
cufflinks 9.314        
cufflinks 5.668        
cufflinks 9.491        
cufflinks 7.438        
cufflinks 9.101        
cufflinks 4.854        
cufflinks 5.434        
cufflinks 8.627        
cufflinks 8.002        
cufflinks 4.555       Low
cufflinks 7.678        
cufflinks 6.852        
cufflinks 6.75        
cufflinks 7.852        
cufflinks 5.867        
cufflinks 10.106        
cufflinks 3.381       Low
cufflinks 5.817        
cufflinks 5.953        

0 Strain