Gene : Sobic.001G412100 S. bicolor v3.1.1
Defline:  (1 of 1) K00995 - CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase (pgsA, PGS1) Genomic Order:  4314
Name:  ? Sobic.001G412100 Secondary Identifier:  ? PAC:37943668
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sbicolor PWY4FS-7 Sorghum bicolor pathologic  
Sbicolor PWY-5269 Sorghum bicolor pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.001G412100 0.5kb upstream 0.5kb upstream 5432 true Chr01: 69480445-69485876 Sorghum bicolor
Sobic.001G412100 0.5kb upstream 0.5kb upstream 500 false Chr01: 69480445-69480944 Sorghum bicolor
Sobic.001G412100 0.5kb downstream 0.5kb downstream 5432 true Chr01: 69480945-69486376 Sorghum bicolor
Sobic.001G412100 0.5kb downstream 0.5kb downstream 500 false Chr01: 69485877-69486376 Sorghum bicolor
Sobic.001G412100 1.0kb upstream 1.0kb upstream 5932 true Chr01: 69479945-69485876 Sorghum bicolor
Sobic.001G412100 1.0kb upstream 1.0kb upstream 1000 false Chr01: 69479945-69480944 Sorghum bicolor
Sobic.001G412100 1.0kb downstream 1.0kb downstream 5932 true Chr01: 69480945-69486876 Sorghum bicolor
Sobic.001G412100 1.0kb downstream 1.0kb downstream 1000 false Chr01: 69485877-69486876 Sorghum bicolor
Sobic.001G412100 2.0kb upstream 2.0kb upstream 6932 true Chr01: 69478945-69485876 Sorghum bicolor
Sobic.001G412100 2.0kb upstream 2.0kb upstream 2000 false Chr01: 69478945-69480944 Sorghum bicolor
Sobic.001G412100 2.0kb downstream 2.0kb downstream 6932 true Chr01: 69480945-69487876 Sorghum bicolor
Sobic.001G412100 2.0kb downstream 2.0kb downstream 2000 false Chr01: 69485877-69487876 Sorghum bicolor
Sobic.001G412100 5.0kb upstream 5.0kb upstream 9932 true Chr01: 69475945-69485876 Sorghum bicolor
Sobic.001G412100 5.0kb upstream 5.0kb upstream 5000 false Chr01: 69475945-69480944 Sorghum bicolor
Sobic.001G412100 5.0kb downstream 5.0kb downstream 9932 true Chr01: 69480945-69490876 Sorghum bicolor
Sobic.001G412100 5.0kb downstream 5.0kb downstream 5000 false Chr01: 69485877-69490876 Sorghum bicolor
Sobic.001G412100 10.0kb upstream 10.0kb upstream 14932 true Chr01: 69470945-69485876 Sorghum bicolor
Sobic.001G412100 10.0kb upstream 10.0kb upstream 10000 false Chr01: 69470945-69480944 Sorghum bicolor
Sobic.001G412100 10.0kb downstream 10.0kb downstream 14932 true Chr01: 69480945-69495876 Sorghum bicolor
Sobic.001G412100 10.0kb downstream 10.0kb downstream 10000 false Chr01: 69485877-69495876 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041214 5273 Angiosperm View MSA
122184074 5267 Panicoideae View MSA
124580312 5269 Grass View MSA
121349383 5274 Embryophyte View MSA
123424626 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 14.054     High High
cufflinks 2.797        
cufflinks 4.83        
cufflinks 7.261       High
cufflinks 3.366        
cufflinks 9.578       High
cufflinks 3.59        
cufflinks 3.94        
cufflinks 5.539        
cufflinks 6.561        
cufflinks 2.008       Low
cufflinks 3.318        
cufflinks 11.231       High
cufflinks 2.407       Low
cufflinks 11.534       High
cufflinks 4.845        
cufflinks 4.4        
cufflinks 3.892        
cufflinks 3.035        
cufflinks 6.564        
cufflinks 3.381        
cufflinks 2.674        
cufflinks 2.621        
cufflinks 2.404       Low
cufflinks 4.031        
cufflinks 3.075        
cufflinks 3.368        
cufflinks 2.275       Low
cufflinks 4.71        
cufflinks 6.834       High

0 Strain