Gene : Sobic.001G394400 S. bicolor v3.1.1
Defline:  (1 of 1) K12121 - phytochrome B (PHYB) Genomic Order:  4126
Name:  ? Sobic.001G394400 Secondary Identifier:  ? PAC:37939961
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.001G394400 0.5kb upstream 0.5kb upstream 9756 true Chr01: 68034103-68043858 Sorghum bicolor
Sobic.001G394400 0.5kb upstream 0.5kb upstream 500 false Chr01: 68043359-68043858 Sorghum bicolor
Sobic.001G394400 0.5kb downstream 0.5kb downstream 9756 true Chr01: 68033603-68043358 Sorghum bicolor
Sobic.001G394400 0.5kb downstream 0.5kb downstream 500 false Chr01: 68033603-68034102 Sorghum bicolor
Sobic.001G394400 1.0kb upstream 1.0kb upstream 10256 true Chr01: 68034103-68044358 Sorghum bicolor
Sobic.001G394400 1.0kb upstream 1.0kb upstream 1000 false Chr01: 68043359-68044358 Sorghum bicolor
Sobic.001G394400 1.0kb downstream 1.0kb downstream 10256 true Chr01: 68033103-68043358 Sorghum bicolor
Sobic.001G394400 1.0kb downstream 1.0kb downstream 1000 false Chr01: 68033103-68034102 Sorghum bicolor
Sobic.001G394400 2.0kb upstream 2.0kb upstream 11256 true Chr01: 68034103-68045358 Sorghum bicolor
Sobic.001G394400 2.0kb upstream 2.0kb upstream 2000 false Chr01: 68043359-68045358 Sorghum bicolor
Sobic.001G394400 2.0kb downstream 2.0kb downstream 11256 true Chr01: 68032103-68043358 Sorghum bicolor
Sobic.001G394400 2.0kb downstream 2.0kb downstream 2000 false Chr01: 68032103-68034102 Sorghum bicolor
Sobic.001G394400 5.0kb upstream 5.0kb upstream 14256 true Chr01: 68034103-68048358 Sorghum bicolor
Sobic.001G394400 5.0kb upstream 5.0kb upstream 5000 false Chr01: 68043359-68048358 Sorghum bicolor
Sobic.001G394400 5.0kb downstream 5.0kb downstream 14256 true Chr01: 68029103-68043358 Sorghum bicolor
Sobic.001G394400 5.0kb downstream 5.0kb downstream 5000 false Chr01: 68029103-68034102 Sorghum bicolor
Sobic.001G394400 10.0kb upstream 10.0kb upstream 19256 true Chr01: 68034103-68053358 Sorghum bicolor
Sobic.001G394400 10.0kb upstream 10.0kb upstream 10000 false Chr01: 68043359-68053358 Sorghum bicolor
Sobic.001G394400 10.0kb downstream 10.0kb downstream 19256 true Chr01: 68024103-68043358 Sorghum bicolor
Sobic.001G394400 10.0kb downstream 10.0kb downstream 10000 false Chr01: 68024103-68034102 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122181166 5267 Panicoideae View MSA
124570607 5269 Grass View MSA
122046644 5273 Angiosperm View MSA
121350342 5274 Embryophyte View MSA
123381687 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.889        
cufflinks 3.022       Low
cufflinks 3.045       Low
cufflinks 4.311       Low
cufflinks 20.514     High High
cufflinks 9.761        
cufflinks 9.242        
cufflinks 12.526     High  
cufflinks 10.959        
cufflinks 10.582        
cufflinks 7.752        
cufflinks 8.533        
cufflinks 13.94     High  
cufflinks 9.211        
cufflinks 10.997        
cufflinks 5.75        
cufflinks 9.127        
cufflinks 9.482        
cufflinks 17.196     High High
cufflinks 8.046        
cufflinks 22.875     High High
cufflinks 6.725        
cufflinks 7.368        
cufflinks 7.488        
cufflinks 5.718        
cufflinks 3.371       Low
cufflinks 6.82        
cufflinks 6.425        
cufflinks 15.797     High High
cufflinks 10.933        

0 Strain